Basic Information

Gene Symbol
Trerf1
Assembly
GCA_035047625.1
Location
JAWNPI010000035.1:20556701-20567369[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 2.8e-10 2.8e-07 30.5 0.1 2 45 1746 1789 1745 1790 0.94

Sequence Information

Coding Sequence
ATGTGCAACGCGTCTGTGGGCAACGAGGGTTCCGTAACACTGCAACTAAGAGATGCGAATGCCTTGGAGGCAGCCGCGagcagcacaacaacagcaacaacagcaacatcagcagcaacatcgtCATCAGGCCAAGCAAGTGCGTCAGGACTAACGTCAGCATTAGAGAATGCGCTAACTATCGGCTATCCGGATCCGGACATGTTAGCAGATGTCTTGGGCACCATACAGACGGCCTCACTTAAGAACAAacaaatcagcaacagcagcaacaacaacaacaaaagaaacatCAATGGTAGCACCGGTCGAAGTAGCGGCACTACTGCGCCAACAATTCTGAACAACTCGATAGCAGCAACGAGCTCTGGAATTCGTCTGAACAGTCCCAATAGGATAACGATAACGCGACGCAGTGCTAGCAATAAGATTAGCGTACAGACTGTGACCGCCTCAACGAATACAACGATTAGCAGCATTGGTGGCAGCAAGACCAACTACATTAAGAACTGTCTaatacgcagcagcagctgcagcaacacgGCCACCAATGTCACGACGCTGGCACAGATtatgagcaacagcagcaccagcagcgccGCCAGTTTACTCAGTCAGcacaacaataatagcaactgcagcaacagcagcaacttcaGCAACGCCTCGTCCGtgggcagcagcatcagcataaGCAGTactaccagcagcagcaccacaagCAGCCACAGTAGCAGTCACAGCATCAGTAATAGtaacagcaacgacagcaacagcagcagcggccacagCCTAAGTTTCAAGAGCAACGGCCGACATGTCGCTGGCatagtagcaacagcagcatccacGAACACCACTGCAACTGGCATTGGCATTATCACTGTCGACCACGCTCCCCGAAAGAGTCGACCTAAATTATCGTCGCCCACACGCCACGGCCCCCAGCAGTGTCAGATTTGTAGCAAGATCTTTGGAAATGCCTCGGCATTAGCCAAGCACAAACTGACGCACAGCGACGAACGGAAATATATTTGTGCGCTCTGCTCGAAGGCATTCAAGCGGCAAGATCACTTAAACGGACACATGATGACGCATCGGAACAAGAAGCCTTACGAGTGTAAGGCGGAAGGCTGCGGCAAATCCTATTGTGATGCTCGCTCCCTTCGCCGTCATTCGGAGAATCACCATGGTGGTGTGGCAACTCCGAATAACAACTCACTCTCGCCAACCAGTAGCACCAACTGCGGCAGCGtgagcagtggcagcagtagcagcagcagcagcagtgtgggcgtggccaccAACTCGCTTAGCCTATCGCCGGCTACGGCGAGCGGAGATGCCAGCTCACCAGACGGTGCCACCTGCATTCGCACCTACATTTCCACCGGCAGCACAGTGGTTGACGCAGCCACTGGCATTGCGCTGTCCGACGAGCAAATCAAGGCCATGAATTTGCCCATCAAAACTGGCGTTACACTGTTGTCGCCCACCACTTCGACATCGTCGAATGCATCGTCTACAGCATCTTCGTCATGTTCCACATCGGGCAGCAGTACCAACAACAGCactaacaacagcaacaaaaacagcaacagcaacagcaacggcaaaggcaatggcaatggaaatTCCACTGTCACCAGCTCACCGACAATTACGCTTAGCGATGGCACTACGCTCGAGGGCGACGGGCTGACTCGCGAGCAGCTCGATCTCATAAGCAAGATCATGCAGCAGACGAAGCAGACCAGTGCTCAGGTGACGGTCTCCTCTCCCACCAGCGTAAGCTCCTATAAAATCAATACAGAGACGGCGCAAGTGTCTTCGCGTCCACGCACCTGGAACATGCAGTTGCTCAATAATTCGCAAAATGTGACGGTAACTGTGGAGGATGGCACAGAGGTGGCAGGATCGACGGGATCATCAGCTGATGAGGTCAAGGAGGATGAAGTGAACCAGCAGCTGGTGGCCGCCATCAATCCCCATCTGCTCAACATTGTGAAGATCGACAAGCCAGTCGAGTGCAATCTATGTCATCGTAAATTTAAGAACATACCCGCCCTTAATGGGCACATGCGTCTGCACGGCGGATACTTCAAAAAGGATCCGGAAACGAAACGCAGCGAGAAAAAGGACTTGAACGCACCTCCGTTGCAGACTGCCAGCATAGGAGTGCGAGCCCTCATCGAGGAGAAAATCATAAGCAAGCGCAAGGATATAAATAAGGGCGCCTTCGTAGTGCCTGCTCCACCGAGCACCACGTGCAACAGCGTTAGCGtctgcagcaccagcagcaacacactAAGACGCTCGATAAGCGACCTGGAGAGCTTTCTCAATCCGAAATGCAGCACCACCAGCCTGAGTCAAGCACTatccaccagcagcagcaccaccacagCGGTGCTGCCGGCGGCAACCACGATCAAGAGCAGCAATGGGCTCAGTATACAGCAGATTGGACTGCCGCAGAGCATCGAGATCTTCAGCGGAGGTCACAGGCAGCCAAAAACTCTCAGTTTGGGCAGTGGTGCCAACACTATAACCATAACCACCAACAATGTGCCTACCACAACCACCATGAGCGCCCTTACGGCACTGAAGGGTGGCGGCACCATCAATGGCATCTCCACCAATGTGGATCCCAAGGATTCGACACTGATTGAGCTGCTTAAGCGTGGAACGCGCATTGCCGTCGCTTCGAAGAAGACCCACATGCAAGCCCAGAGCAGTACAAACCTGTTGCTGAGCAATGTGACGGGCACGGAGCTCACAGCTATAGGCAGCAGTGTCCAGGCAGCCGGACGCCAGATAATCACCAACAACAATCGCACCGTCATCATACCCTCAGATGTGCATGTGGTGTCCACAAAGAGCAAACTCATCTCGAGCCAAGCCATCAcagccaacgacaacaacaatagtagcaacagcagcaacaacgcacCGTCTTCTGCGAGTAGCATCTCATTGCCGGACGGCACTCCGCTCTCAGTGGCCATTGCGAATGGCCAGGAGAGTCTAGGCGCCAGTGAAGCGAGCGGCATTacaggcggcggcggtggtgttTATACGGTGACATACACCAGCGATGCTGACGCCTCGGACCTCTTCGACGATACAGAGGTCTACAATGTGTCGGATACGGAAATGCTGCTCCAAACGGTGGATACCATGGAATTGCTCAATGATGACGAGGATGAGGTGCAAAAGAGCGAACATTCCGAGGACTTCTCGCTGCTCAACGAAGCCGGCGAAACTGGTCATACCCAACTAGTCAAAATGGAGCCAGACCTATCACCATCATCAgccaacaccagcaacaagaCAACGCCATTGCCCACCTTCCAGCAGTTCCATTCCAAAGAGATCATCATGCAGAACAGCTCACAAATTCAGGCCATTGCCAACATGCGCGGCGGGGGCAGTCTAGGCGTACTCGCCTCACCCCTACATTCGCCAATAGCCTATCCGACGCCGCCGTCCAGCCACGAGAACATGGCTCAGTCGTCGCCTTTCATAGAGGATGCGGCGGCGCAGTTTGTGGACGCCAGTCACACATTCTTTGGCGACAAGACAGACTTCTCGCATGTTTATTTCAAAACAGACGAAAGCGACTCCATGCAGGAGCTCACGGAGAACGACAACGAGAAGATACTCAAGTTGAAGACGGTGCTCGAGGAGAGCAGCTTCGGTCCCTCTATCAAAGTGGAAGATCTGTTAAGCGGCACCGAAGATGATGCTGAGTGCGATTTGCGTGAGTTTGCTGAGACTAATCTCTCGTTCCTGGATGAGGATCAGGAATTCCTGAATGATTCGCGAAATGCCACCTCTCCGCTGTCAGAGTCTTTCTTCACCAGCGGCATTGGCTCGGCCGAGGATGTTAAGCAAGTGCTGCGTGAGGTGCTGCCCGAGGAAAATATCCAATTACAgctgagcagcgagcagcaggGCGAGAACATTATAGATCTGTACTACTTGCCGGGTCTTGGCCTCCAATCCCAGATGATGCCCAACTCCGACGATCCGCTTTTGTCGTCTTCGCCTCGAGAATTTGGCCAGCAGCGCCAGGTTGTGCACACAACTGCAGCGTCAACTGCGACCGTGCAACCTATCGAGCAGTTGCAGTCTACGACTGTGCTTTATGATcagcaccaacaacatcagcagcagcagcaattacaaatgcaattgcaaatgcATGCCCAGCAACATCAATCGGAACAGCAGCCACCACAAgatgagcaacagcagcagccgcaccaacaacaactaggAACTCAGCAGCAACACATGCAATTGCCACAGCTACCTGTTACTCACAGTGAGCAatcccaacagcagcaacaagcagaCTTCATGCTCACCAACTTTACGCCCGTGAGCTGTCAAGCCCAGTACATAGATGCCAATCAGCAACCGATGATGTTGCAGCCGTTGAATAGTCTGCTGCAGCCCGTGCtctatggcagcagcagcgctgccaacAATAAGCCCGCATTTGGCTCGCTGCTCAGCTCCAATACGGCTCAGGCAACTGCACTCGATGCGAGCCTGCTCTTTGCCTGCGATGACTCTAAAAATAACTGCAACAAGTCGATGCTGGCCGCTTTACCCGCGGCGATTCCGACGCCCGTAGTCACTGCTACACCAAGTGTTGCAAATCTTCAGCCGTTGTCCAATCAAACAAATTCCATACTGAAGCGTCGACTGCGGTCCAATGGGCCGCAGGATGTGCACAAGTTCTCGAAATTCCATACACTTTCGCCGCATCGCTCAAAGCTGCGCAAGCCATCACGGACCCACTACACCCCTGCCCCGATACTCAATCCGGATCGCAAGGGCACCGGGCTCTACTGCAATGTGCGCAAGCAGCTTGGTCAGGGAATGTTCGACGTGTTCGACGATGACTTTGGCGATCCTGTAGGCTTGGTGGACTTCTGCGACGAGTCCAAGGTGAATCTGGGCTCCACTTATCAAGCGCAGATCCCAGCCTGCAAGGCATCAGAGGAATCTAGCAAGGAACCCATGTGCGCCGACCTAATGTGGGACCCCAGCGTCCAGTTAGACGACAAGATATTAATGCGTTACATAGATCTCAGCAAATCATCGGCCGTACCCATGGGCAGCCATTCCGAGGAAGTAGCCTTGCAAACGCTGCTCGACGCAAAGGGCAACTCAGCGGCTGCGGTGCTTACTCTACTCCAGATGCAGTCCAGCGCATTCCAAATGAAGTGGACTGCCTATGAGCTAGAACAGTTTCTGCGCGGCCTCGAAAAATACGGCAAAGACTTTGGCAAAATCGCCAGCGAGCTTCACACCAAGACTTCGGGCGAATGCGTGCAAATGTATTATTTCTGGAAGAAACTATGCGTGGACTACAAGGTATCGCACCTCAAAATGGAGCCAGTTCCCGCAAGCATCCCAATGGTAGAGCAGAAGCCCTACGTCTGCGAAATAGCTGACTGCTCAGCGAGCTTCAGCTCGAAGGCGGCGCTGCATGGTCATGTCCGCATACACGCTTATGGTAGAaatgccagcaacaataatagcaacaacagcaacaacaacaacaaccagcatGCAACGGCAACtagtgccaacaacaacaacaacaacagcagcaacagcaacaacacccaTAGCAGCAACGCATGCACACCCCTGACTAGCAGCAGTCAACAGactagcaacagcaacaatgcaacagcaaccatAACGCACACTAATGGCAATAGCAACACCACCgcgaacaacaataataatatgagcaacaacagcagcatcgcTGGCATTTGCACAAACTCAGCGCAGATGCTCTCAATAGCAACAAAGACACTAGCAACCggtgcggctgcagcagcagccacggctgcagcagcagcagcatcatcatcttcGACAGCAACGAAAgacagtagcaacagcagcaattccAATATGCCCAAGGACAGTGAATTTCCCTGCAAGGTGTGCGGCAAAGTCTTCAATAAGGTGAAAAGTCGCAGCGCCCACATGAAAACGCACCGAGTACAAGAGGCAGAACAATCAGCCAATTCCAAGCAGCAATCATCCAcacttgttgttgccgtcgcatcagcagcagcaacgtcagcagcagcaacatccgcctcagcagtagcagcaacagcaatggccaCAGCAACTTCGTAG
Protein Sequence
MCNASVGNEGSVTLQLRDANALEAAASSTTTATTATSAATSSSGQASASGLTSALENALTIGYPDPDMLADVLGTIQTASLKNKQISNSSNNNNKRNINGSTGRSSGTTAPTILNNSIAATSSGIRLNSPNRITITRRSASNKISVQTVTASTNTTISSIGGSKTNYIKNCLIRSSSCSNTATNVTTLAQIMSNSSTSSAASLLSQHNNNSNCSNSSNFSNASSVGSSISISSTTSSSTTSSHSSSHSISNSNSNDSNSSSGHSLSFKSNGRHVAGIVATAASTNTTATGIGIITVDHAPRKSRPKLSSPTRHGPQQCQICSKIFGNASALAKHKLTHSDERKYICALCSKAFKRQDHLNGHMMTHRNKKPYECKAEGCGKSYCDARSLRRHSENHHGGVATPNNNSLSPTSSTNCGSVSSGSSSSSSSSVGVATNSLSLSPATASGDASSPDGATCIRTYISTGSTVVDAATGIALSDEQIKAMNLPIKTGVTLLSPTTSTSSNASSTASSSCSTSGSSTNNSTNNSNKNSNSNSNGKGNGNGNSTVTSSPTITLSDGTTLEGDGLTREQLDLISKIMQQTKQTSAQVTVSSPTSVSSYKINTETAQVSSRPRTWNMQLLNNSQNVTVTVEDGTEVAGSTGSSADEVKEDEVNQQLVAAINPHLLNIVKIDKPVECNLCHRKFKNIPALNGHMRLHGGYFKKDPETKRSEKKDLNAPPLQTASIGVRALIEEKIISKRKDINKGAFVVPAPPSTTCNSVSVCSTSSNTLRRSISDLESFLNPKCSTTSLSQALSTSSSTTTAVLPAATTIKSSNGLSIQQIGLPQSIEIFSGGHRQPKTLSLGSGANTITITTNNVPTTTTMSALTALKGGGTINGISTNVDPKDSTLIELLKRGTRIAVASKKTHMQAQSSTNLLLSNVTGTELTAIGSSVQAAGRQIITNNNRTVIIPSDVHVVSTKSKLISSQAITANDNNNSSNSSNNAPSSASSISLPDGTPLSVAIANGQESLGASEASGITGGGGGVYTVTYTSDADASDLFDDTEVYNVSDTEMLLQTVDTMELLNDDEDEVQKSEHSEDFSLLNEAGETGHTQLVKMEPDLSPSSANTSNKTTPLPTFQQFHSKEIIMQNSSQIQAIANMRGGGSLGVLASPLHSPIAYPTPPSSHENMAQSSPFIEDAAAQFVDASHTFFGDKTDFSHVYFKTDESDSMQELTENDNEKILKLKTVLEESSFGPSIKVEDLLSGTEDDAECDLREFAETNLSFLDEDQEFLNDSRNATSPLSESFFTSGIGSAEDVKQVLREVLPEENIQLQLSSEQQGENIIDLYYLPGLGLQSQMMPNSDDPLLSSSPREFGQQRQVVHTTAASTATVQPIEQLQSTTVLYDQHQQHQQQQQLQMQLQMHAQQHQSEQQPPQDEQQQQPHQQQLGTQQQHMQLPQLPVTHSEQSQQQQQADFMLTNFTPVSCQAQYIDANQQPMMLQPLNSLLQPVLYGSSSAANNKPAFGSLLSSNTAQATALDASLLFACDDSKNNCNKSMLAALPAAIPTPVVTATPSVANLQPLSNQTNSILKRRLRSNGPQDVHKFSKFHTLSPHRSKLRKPSRTHYTPAPILNPDRKGTGLYCNVRKQLGQGMFDVFDDDFGDPVGLVDFCDESKVNLGSTYQAQIPACKASEESSKEPMCADLMWDPSVQLDDKILMRYIDLSKSSAVPMGSHSEEVALQTLLDAKGNSAAAVLTLLQMQSSAFQMKWTAYELEQFLRGLEKYGKDFGKIASELHTKTSGECVQMYYFWKKLCVDYKVSHLKMEPVPASIPMVEQKPYVCEIADCSASFSSKAALHGHVRIHAYGRNASNNNSNNSNNNNNQHATATSANNNNNNSSNSNNTHSSNACTPLTSSSQQTSNSNNATATITHTNGNSNTTANNNNNMSNNSSIAGICTNSAQMLSIATKTLATGAAAAAATAAAAAASSSSTATKDSSNSSNSNMPKDSEFPCKVCGKVFNKVKSRSAHMKTHRVQEAEQSANSKQQSSTLVVAVASAAATSAAATSASAVAATAMATATS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00573254;
90% Identity
iTF_00546879;
80% Identity
iTF_00546879;