Dmer011697.1
Basic Information
- Insect
- Drosophila merina
- Gene Symbol
- ken1
- Assembly
- GCA_035047645.1
- Location
- JAWNPH010000059.1:4287201-4289394[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0024 0.22 12.3 5.9 2 23 183 204 182 204 0.96 2 12 0.00078 0.071 13.8 0.1 1 23 210 235 210 235 0.93 3 12 0.019 1.7 9.4 0.1 3 23 244 267 242 267 0.93 4 12 0.0011 0.1 13.3 1.0 2 23 280 301 279 301 0.96 5 12 8.5e-06 0.00078 20.0 0.6 1 23 308 330 308 330 0.98 6 12 0.0051 0.46 11.2 0.1 1 23 336 358 336 358 0.98 7 12 0.012 1.1 10.1 1.7 1 23 364 387 364 387 0.97 8 12 0.0092 0.84 10.4 4.0 1 23 393 415 393 415 0.96 9 12 0.00077 0.071 13.8 2.9 2 23 422 443 421 443 0.96 10 12 0.00025 0.023 15.3 1.1 3 23 532 553 530 553 0.95 11 12 0.0021 0.19 12.5 0.6 1 19 559 577 559 581 0.95 12 12 1.7e-06 0.00015 22.2 0.9 1 23 587 609 587 609 0.98
Sequence Information
- Coding Sequence
- ATGGCCACAAGGCAGCACCAGGTGGCCATCCGCAGACTATGTCGGATTTGTCTCTTCGACTTGGAACAGGCTGTTGGGCACGATTTGTTCCAGGAGCCAGAACTGGCCAAAAAGTTCTCCGTTTGCACTTCACTGGATGCTGAGAAGCAGGACGGATTTCCAAGTCTCCTTTGTGAAACATGCCATGGAAAGCTAAACGAGCTCCACGATTTCAGGGAATTGTGCTTGGGATCCAGAGAGCGCTTCAAGCAGCTGTTGGCTAGCAAATTAGTAACTCAAATTGAAGTATTTCAACCTGTTGGAGAGGATTCCGAGGCGGAGGAACAGGCTAACTATGATCCCCTTTTAAATCATAAGCTTGAAATAATTGACAACGAGGAGGAGGTCTTTAAGATGCTGGAAACCGTGGATAAGGACCAGGAGGAGCTGAGAATCATAGACGAATCTTCCAACAACGAAGCGGATGAGGGCGAGGATGAAGATGAGAAGCCGCTGGCAAAGCGACAGTGCACTCAAACTAGGGAGCGGCATCGTCTCCAACTTATTACTTGCCTCATCTGCCATCAAAAGTTCAAAAAGCAATCCAAATACGAGGAACACATGAAGCATCACAACGATCTTTTGCCATTCCAATGCTCTGAAGTAACTTGCAAGAAAGGCTTCACCACTGCTGGGGCACTGCGTCTTCACGTCGACTATGCACATACGAAAAAATCCAATGAGATTCCCTGCACCGTAGAGGGTTGCAGGCTGATCTTTCCCCGCCTCCGCCTACTCACGATTCACTTGAAGAAAGTCCACAACCAGACAAGAGTTAGTGCTCCTCGTGGAGATCAACCATGCCGCGAATGTGGGATGGTCTTTCGTTGTCCAGTGGCTCTGAAGAAACACATGTACAAGCACACGGGCGAGGAGCTGCCGTATCCCTGCAACATCTGTGGCAAGGGCTTCCACATCAACAGTGCCTTGAAAAATCACCTTCTCCGCCATGCCGGGATCAAAAATTACGTTTGTCCCTATTGCGGAGTTGGAAAAACCACCAGGCAGGAATGGAGCAAACACATTCTGACCCACACCCAGGAGAAGCAGTTTAAGTGTGAGGTCTGTGACCACGCCACCCACACGAAAAGAGCGTTGGACAGTCACGTGAAGATTGTCCACGAAAAGGTAAGGAACTTTGCCTGTCAATATTGTGGAAAGACCTTTGGAAAATCCCATGCTTGCAAAATACATGAGATGACCCACACGGGGGAGAAGCGCTGTGAGTGTAAGGTGTGCGGCAAGAAGTTCCTTTACACAGAAAGCCTAACGAAGCATCTAAAAATCCATGAGAAGAGCGTGGAACGAGCTCTAGAAACGTATCGTCAGCGGCAGGGCGAGGGAGATATCACCGAAGCTCAGGTGAACGCGGATCAATTGCTTAAGGTTTGTGCGGAGTCTGTGGCGACCATTCCCAAAGATCCACGCCGCGTGGAACGAGTTGATCTGGCCCAGCTGGCAGGGACAATAGTTAATCCCATCCCTATGATCCAGTTGCCGCCAAGCGAGACCCCTGCCCGCACGAAATTTGTCCAGAAAGAAGGTATGCACCTATGTCCAGGTTGTAGTCAAGGGTTCAACAATCTGGGAAACATGAAGCGCCACTACAAGAGCGTCCACGAAAAGGTAAAGGACTTTGAATGCCGCTATTGTGCCCGACGCTTCGCGAACTCGCAATCTTTGAAGCAGCACGAGTGGATTCACACAGGCGAAAAGCCGTATGAGTGCAAGAACTGTGGCACTCACTTCCGCCAAGAGGCGGCTCTTATCCGACACCTGAAGGTTCACGACGAGAGACCACCGAAACCTCCAAAGCCACCAAAGGAAATTACTGACAGAGCTCGCCAGAAAGCCATCCTGAAATGTGCACATAAGCGGAAGGTAGAAGCCCTCCGACAGGAGATTGCCGTAGTGGCCAAGGAGGAGCTGAAGGATTTGGAGAAGCAGCGGACACTAGAAAAACAGCAGAATACCTATGAACAGTATCtggcagcagctgcagccgACCAAACGTGTTCCATGGTCCCAGAGACATCATAG
- Protein Sequence
- MATRQHQVAIRRLCRICLFDLEQAVGHDLFQEPELAKKFSVCTSLDAEKQDGFPSLLCETCHGKLNELHDFRELCLGSRERFKQLLASKLVTQIEVFQPVGEDSEAEEQANYDPLLNHKLEIIDNEEEVFKMLETVDKDQEELRIIDESSNNEADEGEDEDEKPLAKRQCTQTRERHRLQLITCLICHQKFKKQSKYEEHMKHHNDLLPFQCSEVTCKKGFTTAGALRLHVDYAHTKKSNEIPCTVEGCRLIFPRLRLLTIHLKKVHNQTRVSAPRGDQPCRECGMVFRCPVALKKHMYKHTGEELPYPCNICGKGFHINSALKNHLLRHAGIKNYVCPYCGVGKTTRQEWSKHILTHTQEKQFKCEVCDHATHTKRALDSHVKIVHEKVRNFACQYCGKTFGKSHACKIHEMTHTGEKRCECKVCGKKFLYTESLTKHLKIHEKSVERALETYRQRQGEGDITEAQVNADQLLKVCAESVATIPKDPRRVERVDLAQLAGTIVNPIPMIQLPPSETPARTKFVQKEGMHLCPGCSQGFNNLGNMKRHYKSVHEKVKDFECRYCARRFANSQSLKQHEWIHTGEKPYECKNCGTHFRQEAALIRHLKVHDERPPKPPKPPKEITDRARQKAILKCAHKRKVEALRQEIAVVAKEELKDLEKQRTLEKQQNTYEQYLAAAAADQTCSMVPETS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00615718;
- 90% Identity
- iTF_00615043;
- 80% Identity
- -