Dmer007801.2
Basic Information
- Insect
- Drosophila meridionalis
- Gene Symbol
- -
- Assembly
- GCA_035045145.1
- Location
- JAWNPG010000025.1:13977194-13984377[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 8.5e-09 1.5e-05 24.7 0.0 17 40 611 635 606 638 0.85 2 4 6.5e-14 1.1e-10 41.1 0.1 2 39 650 687 649 690 0.94 3 4 1.5e-17 2.6e-14 52.7 0.0 1 45 704 749 704 749 0.98 4 4 1.5e-19 2.7e-16 59.1 0.0 1 43 756 799 756 800 0.97
Sequence Information
- Coding Sequence
- ATGCATCCTTTACATGCGCCGCCACACTACGCCGCAGCGCGCTGTCCGCCCGCCTGCTCTGGCCCCGGTCTGTTGCGCACCGCGGagcaattgaaaatcaaagGACTGTGCGAGCCTGCCGAGAATGCGGACGATTTGAATGACGCTGCATCGGCGATAATCACTGTATCGGAGAACATACAGCAGGCGGTCGTTGGCAATATTGTTAATGCGAGTCTGGTGTCCGGTGCTCCGTCGCCCAcactcgagcagcagcagcaccatcagcagcagcagcaacagcagcaacaccagcaacagcagcagcagcaacaggagcaccagcagcaggtgcaacagcagcaccaattGGTGAATAGTGCGTTGCTGGCGCAGCATACGCTTGCCACAAGCAGCGGCATACAGTTGGCGGCAGGGCAACAGCTGTTGAGCAACAcaggcggcaacagcagcagtagcagcagtagcctgcaacagttgcagcagcagcagcagcagcagcaacagttgcagccaaCGCCGCGTAAATCGCGACTGCGTAAACGCTCCAAGTCGCCAGATTTGCAACTGCAAacacagtcgcagcagcagcagcaacagcagcaacagcagcaacagcagcaacagcagcagcagcagcaacatcatcatcatccacAAACGATACTCATCCAGGGACAGAACCAAACATCGATCGTGAGTCTGCAGCAAACGGCCGACGGCAATTATATACCAGTTGCAACAACTGGCGACGACTCCGATTGCGATAATAAGCCGCAAAAGATTTGCAAGACAGAGCAGTCGGTGGCCTCGCCGGCATCCAACTCGTCCACATCGAATAATGCAGCGGGCGTGAGCGGCCAGGCGATTGTGACACAAATTGTAGTAGCGCGCGACggaaaagataaaaatatgaCTAGTTTAGGCATGGGCATGAACGGCGGTCTGTTGAGCGTGCCCATGGGCTTTCTGGACTTCACACCGGAACCACCAGCACCATCGGCCACACCAGTCACCGTAACGGAACACGTCGATCTATCGTGCAACCCCAGCACCGATACACGCGATCTATCAAaTCCCACCGAACAGCTCGACATAGACAATCATTTGGCTCAGCAAATCCATCGGCTCGATCAATCTCCCATGCACTCGATAGCGCACCATCATGCCACCGGAGACGAGAGTAACTCGAATCTGGTGCAGCATATCAAGAGCGAGGTAATCGAGGCCAAGCATCTGGCTCATgtgcaggcgcagcagcagcagcaacagcagcagcagcaacaacagcagcaacagcagcaacaacaacagcagcaacacgcagcacatcatcatcagcatttgCACGCTCAGCAATTGTTGGCGCAAagtcagcaacagcagcaacagcagcagcagcagcaacaacaacagcaacaacaacagcagcaacatcaacagcagcagcagcaggcggcggtGCATGCAGCACAGCATGCAGCGCATGCCACGCATGCGGATATTGGTGGTGCCACTGTCATGGAGATTGATCCGAGCCAGATCAAGCATGAGCCGGGCATGATTATAACGCCAGAGATTGTCAATATGATGTCCACCGGGCATATGGACATGTACAACTCGGATACGAGCGAGGACTCAATGATGATCGCCAACGGTTCGCCGCACGATCATAATGAGCCGCATTATACGAATTTGGATCAGCAGCACGGCGGCCTGGGTGGCAGCGTTTGCGGCCCCGGCGccggtggtgttggtggtggtggtggtggcggcattggtggtggtggtgttaaTGCTGGCGAGAAAGATGCATTAAAGACCCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATACCATCAACGACCTTATGGCAGCGTGCTCATCGTTTGGGCATCGAAACGCCTAAGAAGGAGGGTGGCACCAAATCGTGGAACGAGGACGCCCTGCAGAACGCCTTGGAGGCGTTGCGTTCGGGTCAAATATCGGCTAATAAAGCATCCAAAGCGTTTGGCATACCCTCATCGACGCTCTACAAGATAGCGCGTCGCGAGGGCATTCGGCTGGCGGCGCCATTCAATGCCGCACCAACCACGTGGACGCCCGAGGACTTGGAGCGTGCATTGGAGGCGATACGCGCCGGCAATACGTCTGTGCAGAAAGCAAGTGCCGAATTCGGTATACCGACAGGAACACTTTATGGACGCTGCAAACGGGAGGGTATCGAACTGTCGCGTTCGAATCCAACACCTTGGTCCGAGGATGCTATGAACGAGGCATTGAACTCGGTGCGCGTCGGTCAGATGTCCATCAATCAGGCGGCCATACACTACAACCTGCCCTACAGCTCGCTCTACGGCCGCTTCAAGCGTGGCAAATACGATGTGGTGGCCAACACAAGTGGCATCTCCCTTAACAATACGTCCGGCAATACGACCGGCAGCATTGAGATTATCGAACATAGTCAAGAGAATTCGTTGCATATGTTGCAGCATCAGTTCCCGTACAGTCCGTCGCCGCATGCGCAGACGCCGCAGCACCATGGAACGCCGCAGCATCATGGAACGCCGCTGCATCACAGTACGCCGCATCACAGTTCGCAGCAGGGGCCGCCGACGCCGCAGGGCATGCAGCAGCATGTGGTGCACATGCAACAGTCGCCGCATCAGgcgcatcatcagcagcagcagcagcacatgcaACAGGATGTTGTCACATCGAGCAGCCAGGTGGTGcacagccaacaacagcagcaacagcagcagcagcagcagcaacaacagcagcagcagcagcagcagttgcagcagatCTATCAGCATCACGGCACGCCCGAGCGTAGTTGA
- Protein Sequence
- MHPLHAPPHYAAARCPPACSGPGLLRTAEQLKIKGLCEPAENADDLNDAASAIITVSENIQQAVVGNIVNASLVSGAPSPTLEQQQHHQQQQQQQQHQQQQQQQQEHQQQVQQQHQLVNSALLAQHTLATSSGIQLAAGQQLLSNTGGNSSSSSSSLQQLQQQQQQQQQLQPTPRKSRLRKRSKSPDLQLQTQSQQQQQQQQQQQQQQQQQQQQHHHHPQTILIQGQNQTSIVSLQQTADGNYIPVATTGDDSDCDNKPQKICKTEQSVASPASNSSTSNNAAGVSGQAIVTQIVVARDGKDKNMTSLGMGMNGGLLSVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEQLDIDNHLAQQIHRLDQSPMHSIAHHHATGDESNSNLVQHIKSEVIEAKHLAHVQAQQQQQQQQQQQQQQQQQQQQQQHAAHHHQHLHAQQLLAQSQQQQQQQQQQQQQQQQQQQQHQQQQQQAAVHAAQHAAHATHADIGGATVMEIDPSQIKHEPGMIITPEIVNMMSTGHMDMYNSDTSEDSMMIANGSPHDHNEPHYTNLDQQHGGLGGSVCGPGAGGVGGGGGGGIGGGGVNAGEKDALKTQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGISLNNTSGNTTGSIEIIEHSQENSLHMLQHQFPYSPSPHAQTPQHHGTPQHHGTPLHHSTPHHSSQQGPPTPQGMQQHVVHMQQSPHQAHHQQQQQHMQQDVVTSSSQVVHSQQQQQQQQQQQQQQQQQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00512640;
- 90% Identity
- iTF_00479563;
- 80% Identity
- -