Dmel013645.1
Basic Information
- Insect
- Drosophila melanosoma
- Gene Symbol
- -
- Assembly
- GCA_035042045.1
- Location
- JAWNLY010000188.1:3124358-3130762[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.1e-09 8.5e-06 25.3 0.0 16 40 590 616 586 619 0.84 2 4 6.8e-14 9.5e-11 41.1 0.1 2 39 631 668 630 671 0.94 3 4 1.6e-17 2.2e-14 52.8 0.0 1 45 685 730 685 730 0.98 4 4 1.6e-19 2.3e-16 59.2 0.0 1 43 737 780 737 781 0.97
Sequence Information
- Coding Sequence
- ATGGGTCTGTTGCGCACCGCGgaacaattgaaaatcaaagGTCTTTGTGAGCCGGCTGAAAATGCGGATGACTTAAATGACGCGGCTTTGGCAACAATAACCGTATCGGAGAACATACAGCAGGCGGTTGTTGGCAACATTGTGAATGCGAGCATAGTGCCCGGTGCGCCCTCGCCCACGatcgaacagcagcagcatcatcaacagcagcaacatcagcagcagcaacagcagcaacatcagcaggagcagcagcaggtgcaacaacagcagctggttAACAGTGCTTTGCTGACACAGCATACGCTTGCAACAAACAGTGGCATACAATTGGCCAACGCTGCtgggcaacagctgctgagCAATACAAGCGGCAGCAGTAACAGTCTGCAACagttacaacaacagcagcagcaacagttgcagccaACGTTGCGTAAATCACGTGTCCGAAAACGCTCGAAATCGCCAGATTTACAATTGGGTGGCAACGCCGtcgtacaacaacaaccacagccggctcaccatcagcagcagcaacaacaacaacagcaacatcaacaacaacaacaacaacagcagcaacaacaacatcaaacgATACTCATCCAGGGACAGAATCAAACATCGATTGTGAGTCTACAGCAGACGGCAGACGGCAATTATATACCGGTTGGATCCGCTGGCGACGACTCCGATAGCGATAATAAGCCGCAAAAGATTTGCAAGACAGAGCAATCGGTGGCCTCGCCGGCATCCAACTCGTCCACATCGAATAATGCAGCGGGCGTGAGCAGCCAGGCGATTGTGACACAAATTGTAGTAGCGCGCGACggaaaagataaaaatatgaCTAGTTTAGGCATGGGCATGAACGGCGGCCTGTTGGGCGTGCCCATGGGCTTTCTGGACTTTACACCGGAACCACCAGCACCATCAGCCACACCAGTCACCGTTACGGAACATGTCGATCTCTCGTGCAACCCCAGCACAGATACACGCGATCTATCAAATCCCACCGAACCGCTCGACATTGACAATCATTTGGCTCAGCAAATCCATCGGCTCGATCAATCTCCCATGCACTCAATAGCGCATCATCATGCAACCGGCGATGAGAGCAACTCGAATCTGGTGCAGCATATCAAAAGCGAGGAGATTGAGGCCAAACACTTGGCCCATGTGcaagcgcaacagcagcagcagcagcagcaacaacagcagcaacaacaacagcagcagcaacaacagcaacagcagcagcaacaacaacaacagcagcaacatgcacatcatcatcatcagttgcACGCTCAGCAACTGTTGGCTcagagtcagcagcagcagcagcagcaacagcagcaacaacagcagcagcaacaccaacagcagcagcagcagcaggcagcggtGCATGCCGCACAGCATGCAGCGCATGCTACGCATACGGAAATTAGCGGCGCCACTGTCATGGAGATTGATCCGAGCCAGATTAAGAATGAGCCGGGCATGATTATAACGCCAGAGATTGTCAATATGATGTCCACCGGGCATATGGACATGTACAACTCGGATACGAGCGAGGACTCAATGATGATCGCCAACGGTTCGCCGCACGATCAGAATGAGCCGCATTATACGAATTTGGATCAGCAGCACGGCGGACTGGGTGGCAGCGTTTGCGGGCCCAGCGtcggtggtgttggtggtggtggtggcggcattggtggtggtggtggtgctggcgAGAAAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATACCATCAACGACCTTATGGCAGCGAGCACATCGTCTGGGCATCGAAACGCCTAAGAAGGAGGGCGGCACCAAATCGTGGAACGAGGATGCCCTACAGAATGCCTTGGAGGCATTGCGTTCGGGTCAAATATCGGCGAATAAAGCATCGAAAGCGTTTGGTATACCCTCATCGACGCTCTACAAGATTGCGCGTCGCGAGGGCATACGGCTGGCGGCGCCATTCAATGCCGCACCAACCACGTGGACACCCGAGGATTTGGAGCGTGCATTGGAGGCGATACGCGCCGGCAACACCTCTGTGCAAAAAGCAAGTGCCGAATTTGGCATACCGACAGGAACTCTTTATGGACGCTGCAAACGGGAGGGCATCGAACTATCGCGTTCGAATCCAACGCCCTGGTCTGAGGATGCTATGAACGAGGCATTGAACTCAGTGCGCGTTGGTCAAATGTCCATCAACCAGGCGGCCATACACTACAACCTGCCCTACAGTTCGCTCTACGGACGATTCAAGCGTGGCAAGTACGATGTGGTGGCCAACACCAGTGGCGTCTCGCTGAACAACACCTCGGGCAACACGACCGGCAGCATTGAGATTATCGAACATAGTCAGGAGAATTCGttgcatatgttgcagcaacagtttCCGTACAGTCCGTCGCCACATCCGCCGACGCCACAGCATCATAGTACGCCGCAGCATCACAGTTCGCAGCAGGGTCCGCCGACGCCGCAGCATATGCAACAGCATGTGGtgcacatgcaacagcagtCGCCACACCAGGCGcaccatcaacagcaacaacagcagcagcagcaacagcagcagcagcagcagcacatgcaacagcaacaggatgTGGTCACATCAAGCAGCCAAGTGGTGCAtagccagcaacagcagcttcagCAGATCTATCAGCATCATGGCACGCCCGAGCGCAGTTGA
- Protein Sequence
- MGLLRTAEQLKIKGLCEPAENADDLNDAALATITVSENIQQAVVGNIVNASIVPGAPSPTIEQQQHHQQQQHQQQQQQQHQQEQQQVQQQQLVNSALLTQHTLATNSGIQLANAAGQQLLSNTSGSSNSLQQLQQQQQQQLQPTLRKSRVRKRSKSPDLQLGGNAVVQQQPQPAHHQQQQQQQQQHQQQQQQQQQQQHQTILIQGQNQTSIVSLQQTADGNYIPVGSAGDDSDSDNKPQKICKTEQSVASPASNSSTSNNAAGVSSQAIVTQIVVARDGKDKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSIAHHHATGDESNSNLVQHIKSEEIEAKHLAHVQAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHAHHHHQLHAQQLLAQSQQQQQQQQQQQQQQQHQQQQQQQAAVHAAQHAAHATHTEISGATVMEIDPSQIKNEPGMIITPEIVNMMSTGHMDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGLGGSVCGPSVGGVGGGGGGIGGGGGAGEKDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVSLNNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTPQHHSTPQHHSSQQGPPTPQHMQQHVVHMQQQSPHQAHHQQQQQQQQQQQQQQQHMQQQQDVVTSSSQVVHSQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00512640;
- 90% Identity
- iTF_00500226;
- 80% Identity
- -