Dmel005434.1
Basic Information
- Insect
- Drosophila melanogaster
- Gene Symbol
- -
- Assembly
- GCA_000001215.4
- Location
- JANZWZ010001094.1:322018-325512[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.27 30 5.7 0.1 1 23 315 340 315 340 0.91 2 16 0.019 2.1 9.3 0.1 3 23 403 424 402 424 0.95 3 16 0.001 0.11 13.3 0.6 3 23 432 452 430 452 0.95 4 16 0.052 5.7 7.9 0.2 1 23 460 483 460 483 0.96 5 16 0.0004 0.044 14.6 0.3 2 23 488 509 487 509 0.97 6 16 0.53 57 4.7 0.1 1 21 517 537 517 538 0.92 7 16 0.017 1.8 9.5 1.5 1 22 557 578 557 581 0.90 8 16 0.099 11 7.0 1.6 3 21 588 606 586 607 0.90 9 16 0.0034 0.37 11.6 0.9 1 23 626 651 626 651 0.96 10 16 0.12 13 6.8 1.3 2 23 669 691 668 691 0.94 11 16 0.0061 0.66 10.8 1.2 2 23 697 719 696 719 0.93 12 16 0.0075 0.82 10.6 0.1 2 23 723 745 722 745 0.95 13 16 3e-05 0.0033 18.1 2.2 1 23 751 773 751 773 0.98 14 16 0.0065 0.71 10.8 0.9 1 23 777 800 777 800 0.93 15 16 4.1e-06 0.00045 20.8 1.1 1 23 806 829 806 829 0.97 16 16 1.1e-05 0.0012 19.4 0.2 1 23 833 861 833 861 0.89
Sequence Information
- Coding Sequence
- ATGTCGGAAAACGCGAAAAACAATAGCTGCCTGCATTGCAGCGTATTCAGTACGAAATACCAGTACCAGGAGATCTTCGATGAGTTTGGAATCGAACTGGGACTGCACAGCAGCTCCTGTGCGAAGTGTGTGTCACCAATCTCATTCGCCTCTTTTGACATCGATGAACTGGAAAGAGAACGGAACGCTGGGAAGGATGCGGCCCAGGGCAAAGATTCCAAGGCAGAGGAGGACCCCATTATCATTACCAAGGTCCAGGCAACTCCACCAGCTGCGAAACCAGCCAAGAAAACAGTGCCTTCAAGGCCCCTGACTAAGGTTCTGCGACCAGTGCCCATTATTCCCACCCGGGAACCGAGTGCCCGGATAAGGAATAGAGCGGCTGCTGCTTCCAATGTAACGCCTGATACATCTAGATCTCCAGAGCCACCAGAGACGCCTTCCACCGAAGATGCTGTTTCCAAAAGTGAGCCAAAACTGGTTTCTAAAGTAGCAGATCAGGAACATTTTAGTGTGCTTATACAAAATATTCTGGACGAAGAGGAAGCTGTTGTTGAGGATGAGACCGCAGTGAAAGAGGAGTCCAGTGAAGCTGTCCAGGTCACAAAGGAAACAGAAGCCCCTGGCCAAATAGTCATCCTAAACAGCGAGGCTGTGACAGAGACCAATCCGGATGAGAATGTTTACATATACGAGCATGAGGATGTTATGAATCCAAATTTGGACAATGTTAAGGTAAAACCCATAAGTTCTGAGGAAAGTCAAAGCGATGATGACATCGACGAGGGAGAGACTAGCAATGTTGTTCTGTTTAACTTTGTGGACATTAAAGAAAAGGATGAAGTTGATAATATTCCGGAGTACTTGGCCACCGTGGTGAAGACGAGCTTTGAAAAGCTGACATTTCAGTGGTGCACTGCACACAAAAGCCGGAGAGATGTCTACGAGTGTCCCATCGAAGGATGCAACAAGGAGTTGAAAGGTCGCAAATTCCTAGCCATGCATCTTGTTTTGTTGCACGCGCCAGTGGCTGAAATTCCGATCTACGGCAGCTGTCCGGAATTACAACAAGCATTCTTGCGCTCATGTAATAAAAAGAAGCGAGGTTTTCGCTCATATTGTGAAATGTGTTCGCTGGAGTTTCCTTCCTGGAAGCGTTTTAATTTCCACAGCCAGTTTCACTTAGAGAAGCACAGACCTAGAGCTTGCTTCGTCTGTGACTATGCCACCACGAACATAGATGAACTTTTTCAGCATTTAAATTATTCTCATGAGCCAGTGGGCACCTTATTCTGCGACCTTTGCGACCGCACTTTCCGGGACCCCTCCGTTTTTATGGAGCACAATAAGTCGCATGCCAATGTTAGCAGCACGACCTACTCTTGCAGCGAATGTATGGCCAACTTTGAGTCGCGGGGCCGGCTAAATGGACACATGAGAGCCATGCACGGCAGTGTAATAAGCTGTGAACTTTGTTCCCGGGAATTTGCCACCGAAGCTACTTACAATATTCACATGAAGAAGCATCTGATCATCGAAAAAGATGTGCACGTGTGCAGCACCTGCGGTCTATTAAGTGATAGCCGCGAAACCCTCCTAGCCCATGTAAATTCCGTGAAGACAGCCTGTTTTGGCTCGAAGATAGACGTGGAACTCCTACGGGATGCTTATGTGTGCGAGTACTGTTCCTCGTACTTCAAGGAAAAGGACTGTCTTCAAGCCCATCGCGATTCCGGGGTACATAAGGATGGAGTGTTTTTGTGTCAGCCCTGCGGCAAAGAATTCCCACATATGAAACTTTATCGCCATCACCTGCGCAACTATCAACAACTTCGATCGGACTCAACACATCGCAGGCTAGAAATATGTGTTTACTACATGTGCGACCAGGAAAACTGCACAGAGTCTTACGTGAACTGGAACTCCTTGTACACACACAAGCGGCGCACACACGAATCCGCGAGCAAGCAGGCGGAGAAGAGTTCAAAGTCTGCCCAGGAATGGGTTTGCCAGTTTTGCTTAAAGGAATGCCGGTCAAAGATGTCCTTGTCTGTTCATGTGGCAAGGAGTCATAACAATGACAACGTCACTTGTCCGTTATGCAATTCTTCGTACAAAAGCCATGATGCTCTGGCCAAGCACCATGCCTATTGGCATGAACCAATAGAGTGTCCTGAGTGCTTTAAAATCGTCAAAAACCGACGAAATTATGACACTCATGTCAATGTGGTGCATTCGAATAAGAAGCGCTATTCCTGCAGTGTCTGCCAGAAGGGCTTTTATCACAAGAGTGAAATGGAAGCTCATCAAAAGCTTCATGGGCAGTCTTACAGCTGCGAACAGTGCAGTTTCACCACCAGGAACAAAAAGTCCCTTTCTGTTCATGTTCTTGGTCAGCACTACAAGCGATTCGCGTTCGAGTGCAACGTTTGTAAAAAGAGGTTTGGACGCAGTCAAGGATTGAAGACGCACATGCAGCGGGCCCATGGTGATAAATACACGTGCCGCGACTACTTCGACGGCGGCTGTGGACGGACTTTTGTAAACAGTTCCCAGTTGAATGTGCATGTCCGAAAGGTTCACGATGGCATCATTTTGCTCCAGGAGGATGTGGTTGAGGAGGACGAATACATCACCGATGATGCGCCAACCACATCTAAAAAGCGCCGCCCGAATGAAAATATTGAGTTTATAGAGGAAGCAGATGGGGATGACATAGTGATGGAAGATGATGACGAGGAGGCGGACGATTTTATTGACGAGATACCAGATGAGGACACACAGAATTAA
- Protein Sequence
- MSENAKNNSCLHCSVFSTKYQYQEIFDEFGIELGLHSSSCAKCVSPISFASFDIDELERERNAGKDAAQGKDSKAEEDPIIITKVQATPPAAKPAKKTVPSRPLTKVLRPVPIIPTREPSARIRNRAAAASNVTPDTSRSPEPPETPSTEDAVSKSEPKLVSKVADQEHFSVLIQNILDEEEAVVEDETAVKEESSEAVQVTKETEAPGQIVILNSEAVTETNPDENVYIYEHEDVMNPNLDNVKVKPISSEESQSDDDIDEGETSNVVLFNFVDIKEKDEVDNIPEYLATVVKTSFEKLTFQWCTAHKSRRDVYECPIEGCNKELKGRKFLAMHLVLLHAPVAEIPIYGSCPELQQAFLRSCNKKKRGFRSYCEMCSLEFPSWKRFNFHSQFHLEKHRPRACFVCDYATTNIDELFQHLNYSHEPVGTLFCDLCDRTFRDPSVFMEHNKSHANVSSTTYSCSECMANFESRGRLNGHMRAMHGSVISCELCSREFATEATYNIHMKKHLIIEKDVHVCSTCGLLSDSRETLLAHVNSVKTACFGSKIDVELLRDAYVCEYCSSYFKEKDCLQAHRDSGVHKDGVFLCQPCGKEFPHMKLYRHHLRNYQQLRSDSTHRRLEICVYYMCDQENCTESYVNWNSLYTHKRRTHESASKQAEKSSKSAQEWVCQFCLKECRSKMSLSVHVARSHNNDNVTCPLCNSSYKSHDALAKHHAYWHEPIECPECFKIVKNRRNYDTHVNVVHSNKKRYSCSVCQKGFYHKSEMEAHQKLHGQSYSCEQCSFTTRNKKSLSVHVLGQHYKRFAFECNVCKKRFGRSQGLKTHMQRAHGDKYTCRDYFDGGCGRTFVNSSQLNVHVRKVHDGIILLQEDVVEEDEYITDDAPTTSKKRRPNENIEFIEEADGDDIVMEDDDEEADDFIDEIPDEDTQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00591851;
- 90% Identity
- -
- 80% Identity
- -