Dmel013784.1
Basic Information
- Insect
- Drosophila melanogaster
- Gene Symbol
- retn
- Assembly
- GCA_000001215.4
- Location
- JANZWZ010001185.1:816825-824353[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.9e-14 1.9e-10 41.3 0.0 2 50 20 68 19 88 0.91 2 2 2.5 6.9e+03 -2.2 0.5 14 14 240 240 215 280 0.53
Sequence Information
- Coding Sequence
- ATGCTCATCTCCGAAGATCAAATTCAGGAGCTCTATGAAATCAATGATGATCCCAAGCGCAAAGAGTTCCTGGACGACTTGTTCTCGTTTATGCAAAAGCGCGGAACTCCGATCAATCGGCTGCCGATCATGGCCAAATCGGTGCTGGATCTCTACGAGCTGTACAATCTGGTGATAGCCCGCGGCGGCTGGTGGATGTTATCAACAAGAAGCTGTGGCAGGAGATCATCAGGGGCTGCACCTGCCCTCCAGCATCACCAGTGCCGCCTTCACCCTGCGCACCCAATACATGAAGTATCTGTACCCGTACGAGTGCGAGAAAAGAATCTGAGCACGCCGGCGGAGCTGCAGGCGGCCATCGATGGGAATCGCCGGGAAGGACGCCGCTCCAGCTACGGCCAGTACGAGGCCATGCACAACCAGATGCCGATGACGCCCATTTCGCGACCCTCTCGCCCGGCTCAGGCCGCCGCTGCCGCCGCCGCAGCTCATCATCGCCTGATGGGCGCTCCCGCCTTTGGCCAGATGCCCAATCTGGTCAAGCAGGAGATCGAGAGCCGGATGATGGAGTATCTGCAGCTGATCCAGGCCAAGAAGGAgcaaggcatgccgccggtcctgggcggcaatcatccccaccagcagcagcactcacagcagcagcagcagcagcagcatcaccaccagcagcagcagcagtcgcagcagcaacatcacctgcagcagcagcgccagcgatcgcagagtccggatctgagcaagcatgaggcactcagtgctcaggtggcactgtggcatatgtaccacaacaacaacagcccaccgggatcggcacacacctcgccgcaacaacgCGAAGCCCTGAACCTGGAACGCGAACGGGAACCCACACCAGAGCCCGTGGACCAGGATGACAAATTTGTGGACCAGCCACCTCCAGCGAAGCGCGTGGGCAGTGGCCTCCTTCCGCCCGGCTTTCCCGCCAACTTCTACCTGAATCCACACAACATGGCCGCTGATGCCGCATCCGAGGGCGAACCAGAGGATGACTACGCTCACGGTGAGCACAATACCACGGGCAACTCGTCCTCCATGCACGACGACAGCGAACCGCAGCAGATGAACGGACACCACCACCATCAGACCCACCATCTGGACAAGTCCGACGACTCGGCCATTGAGAACTCACCCACCACGTCGACCACCACCGGTGGGTCGGTGGGTCATCGTCACAGTTCGCCCGTTTCCACTAAGAAAAAGGGCGGCGCTAAGCCCCAGAGTGGAGGAAAGGACCTGCCGACCGAGGACAAGGATGCGTCGTCCAGTGGCAAGCTCAATCCTCTCGAGACGCTGAGCCTGCTGTCCGGAATGCAGTTTCAAGTGGCACGAAATGGAACTGGCGATAACGGCGAACCGCAGCTGATTGTCAATCTGGAGCTTAATGGCGTCAAGTACTCGGGAGTGCTGGTGGCCAATGTGCCGCTGTCACAGAGCGAGACTAGGACGAGCTCACCCTGCCACGCCGAAGCCCCGACAGAGGAGGAGCCGAAAGCCGCTGAAGAGGAATCGCATCGATCGCCAGTTAAACAGGAGAACGAGGATGCCGACCAGGACATGGAGGGCAGTGAAGTCCTTCTGAACGGAGGCGCTTCGGCGGTGGGTGGTGCTGGTGCTGGTGTGGGTGTGGGTGTGGGTGTGCCCCTGCTCAAGGATGCCGTGGTCAGCTAG
- Protein Sequence
- MLISEDQIQELYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGWWMLSTRSCGRRSSGAAPALQHHQCRLHPAHPIHEVSVPVRVREKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMPMTPISRPSRPAQAAAAAAAAHHRLMGAPAFGQMPNLVKQEIESRMMEYLQLIQAKKEQGMPPVLGGNHPHQQQHSQQQQQQQHHHQQQQQSQQQHHLQQQRQRSQSPDLSKHEALSAQVALWHMYHNNNSPPGSAHTSPQQREALNLEREREPTPEPVDQDDKFVDQPPPAKRVGSGLLPPGFPANFYLNPHNMAADAASEGEPEDDYAHGEHNTTGNSSSMHDDSEPQQMNGHHHHQTHHLDKSDDSAIENSPTTSTTTGGSVGHRHSSPVSTKKKGGAKPQSGGKDLPTEDKDASSSGKLNPLETLSLLSGMQFQVARNGTGDNGEPQLIVNLELNGVKYSGVLVANVPLSQSETRTSSPCHAEAPTEEEPKAAEEESHRSPVKQENEDADQDMEGSEVLLNGGASAVGGAGAGVGVGVGVPLLKDAVVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00504469;
- 90% Identity
- -
- 80% Identity
- -