Dmel004182.1
Basic Information
- Insect
- Drosophila melanocephala
- Gene Symbol
- stc
- Assembly
- GCA_037043625.1
- Location
- JBAMBD010000213.1:578889-582968[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.4 1.2e+04 -3.6 0.5 15 18 352 355 351 356 0.79 2 15 2 1.7e+04 -4.1 1.6 15 19 379 383 378 383 0.81 3 15 0.015 1.2e+02 2.7 2.5 4 11 412 419 411 420 0.91 4 15 5.7e-07 0.0048 16.8 15.1 1 19 424 441 424 441 0.93 5 15 2 1.7e+04 -4.2 1.4 6 10 467 471 466 471 0.87 6 15 2.4e-08 0.0002 21.2 11.4 1 18 477 494 477 495 0.96 7 15 2 1.7e+04 -6.2 3.9 7 13 499 505 499 506 0.74 8 15 2e-09 1.7e-05 24.7 12.9 1 19 535 553 535 553 0.98 9 15 2.3e-05 0.2 11.7 17.0 4 19 601 616 594 616 0.88 10 15 0.056 4.8e+02 0.8 11.6 1 11 656 666 656 678 0.79 11 15 4.6e-10 3.9e-06 26.7 15.5 1 18 683 700 683 701 0.97 12 15 1.6 1.3e+04 -3.8 1.8 6 10 730 734 728 735 0.61 13 15 2 1.7e+04 -5.8 9.5 9 18 747 757 737 758 0.79 14 15 2.6e-08 0.00022 21.1 12.6 1 16 794 809 794 817 0.95 15 15 7.8e-08 0.00066 19.6 12.5 1 19 827 846 827 846 0.96
Sequence Information
- Coding Sequence
- ATGGCCGAAtattggcaacagcagcaacaacaacagcagctacaagagcagcagcagcagccgccaacgcagcaacagcagctaacaAATGGAGCAGCAGCTCATAATGACTCAGACGCCGCTGCTTCtatcgctgccgctgccacagTCGCTGCATGCAATTGGCagagtaacaacaacaacaactatgtTAACTTCAATCAGTTCATCACGCAGCATAATTTACACAGCTCCAATCTTGGCtacagcagcggcggcggtggcggtgccTTTGGCATGACgcccgccagcagcagcggcagcgctgCCAACAACTCCAGCTTTGGCGTCGGCCAATATGCGGCGCCTATTTTTGGCTATCAGAATGGCGATGCCGCTGGCCAAAATTATCCCAATTTGTACTCAGCCTTTGGCAGTAATCCAtttgctgcgcctgctgccGGCGGCGCCTCTTTCGATTTTAGCGCTTCCAAGCTGCAGGCGACGGCGCCTGAATTTGTGCCCAACTTCGCCAAGCTAAGCCTGTCGACGAGcaaagccaacagcagcagcagtaatagcaataataataataataatagcaacaacagcaacactgcCACAATACAGCACACGCCACATGAGGCAGCTAGCAGCAATGCTCAACGAGGCTTGGCGAAGCCGCTGGCTGGCGGCAATAATtctcggcagcagcagcgacgccaggACTATCGCGAAGATCGCCACGAGGATCGCTACGAGCGTGGCAAGAAGccgcagaagcagcagcgctATGACAATCATCGCAGCAACAAAAGACGCGACGACTGGAATCGCAATCGTGACCGCATCAATGGCTATCCGCGCGCCGCCGACGAACTggacaccagcaacagcaacgacagtGCGCAGCCTTCGCCCGAGAAGCAGCTGCCACACCAAGTCTCCCCTCGGCGAGCGCCCGACAATGAGAAGCTGTCGCAGCGGGAGAAGCTGATGCGCGACATCGAGCAGCGGCGACTGGAGTGCTTAGTGTGCGTGGAGCAGATCAAGGCGCATCATGGCACGTGGTCGTGCCAGAATTGCTATCATGTGCTGCATCTCAAGTGCACCATCACCTGGGCGAGCAGTTCCAAGTCGGCGGAGGGCTGGCGCTGTCCAGCCTGCCAGAATGTGCTGCAAGAGTTGCCGCGCGAATATCTCTGCTTCTGTGGCAAGTTGAAGAATCCGCCGCTCACACGCAACGAGCTGGCGCACACTTGCGGCGAACTCTGCTGTCGCGTCGAGGGCTGCAGTCATGCGTGCACCCTGCTCTGTCATCCGGGTCCGTGTCCGCCGTGCCAGGCGAACGTGTTGCGCAGCTGTGGCTGCGGACGCACCTCCAAGCTGATGCAGTGCGCCAtgaagcagcaactgcagtGCGAGGCCACCTGCGACAAGCCACTCAACTGCGCCGAGCATCGTTGCCAGCAGTTGTGCCATGCGGGCAAATGTGAGCCGTGTGCGGAGCAGGTGGAGCAACACTGCCactgtggcaagcagcagcgcGAAGTGCTCTGCACCAAGGAGAGTCAGGATAGGCGCAGCTATTCGTGCAAGGAGTGCTGCGGCAAGCCGTTGCCCTGCGGCAATCACAAGTGCAAGGATTCGTGCCACGCCGGCGCCTGTCGTCCCTGCAAGCTGAGTCCGCAGCAGATCACCAGTTGCCCCTGTGGCAAGTTGGCAGTGCCTCCGACGCAGCGCAGCAGCTGTCTGGATCCGGTGCCGACGTGCGAGGGCGCGTGTAGCAAGACGTTGCGCTGTGGCAAGCCGGCGCATCCGCATCAGTGCGCCAGCAAATGCCATTTGGGGCAGTGTCCGCCGTGCCCCAAACAGACGGCCGTCAAATGCCGTTGCGGCCACATGGATCAGCTGATCAAGTGCCGTCAGCTATCAACCCGGGCGGACGATGCACGCTGCAAACGCCGTTGCACGAAGAAACGCAGCTGTGGCAAGCACAAATGCAACGCGGAATGTTGCATCGACATCGACCATGCCTGCCCGCTGCCCTGCAACCGAACGCTGAGCTGCGGCAAACACAAGTGCGATCAGCCCTGCCACCGCGGCAATTGTCCGCCCTGCTATCGCAGCAGCTTCGAGGAGCTCTACTGCGAGTGCGGCGCCGAAGTGATCTATCCACCGGTGCCGTGTGGCACCAAACGGCCGCCCTGCAAACGGCCCTGTTCACGCACCCACGGCTGCGAGCATGTACCGCAGCACAGTTGCCATGCGGCGGCCAGCTGCCCGCCCTGCATGATGTTCACCACGAAGTTTTGCCACGGCAATCACGAGCAGCGCAAGACGATACCCTGCTCGCAGGCCAGCTTCAGCTGTGGCTTTCCCTGCGCCAAGCCGCTCGCGTGTGGCCGCCATAAATGCATCCGGCCGTGCCACGAGGGCGAGTGTCCGCAGCAGCCGGGCGAGCTGTGCCGCCAGAGTTGCACCAAGCCGCGTCCGTTGTGCGGCCACAAGTGTGCCGCTGTCTGCCACGATGGCGCCTGTCCGGAGACGCCGTGCAAGGAGCTCGTCGAGGTGCAGTGCGAGTGCGGCAATCGCAAGCAGAGCCGCAGCTGCCAGGAACTTGCCCGAGAGCACAGTCGCATTGCCACCGCCCAGCTGGCCTCCTCCATGGCGGAGATGTCGCGCGGCAACTACATGGAGCTCAGCGAAATACTCGCAcccaccaaaaacaacaaatccaaCAAAACTTTGGACTGCAACGAGGAGTTCTCGGAATCGGAGTCGCAGCTGAAGTCGCTGACGAAGTACTCGGAATTCTTGCGCGGCTTTGCCAAACGCAATCCGGTGCTAACCAAGAGCGTCTACGAAACGCTCAGCGATCTGGTCAAGCTGGCCAAGGAGAGCAAGCAAAAGTCACGCAGTCACTCGTTCCCCACGATGAATCGCGAGAAGCGTCAAATGGTGCACGAGCTGTGCGAAGTGTTTGGCGTGGAGTCCGTCTCCTATGACAAGGAGCCCAATCGCAACGTGGTCGCCACCGCGCACAAGGAACGCTGCTGGTTGCCCGCCACTAGCGTCATGGAGGTCCTGGCCCGCGAGTCCGGTCAGCGTCGCGTCCCGGTGCCCAGCAACAATGCCTGGGGCCTCAAGAAGTAG
- Protein Sequence
- MAEYWQQQQQQQQLQEQQQQPPTQQQQLTNGAAAHNDSDAAASIAAAATVAACNWQSNNNNNYVNFNQFITQHNLHSSNLGYSSGGGGGAFGMTPASSSGSAANNSSFGVGQYAAPIFGYQNGDAAGQNYPNLYSAFGSNPFAAPAAGGASFDFSASKLQATAPEFVPNFAKLSLSTSKANSSSSNSNNNNNNSNNSNTATIQHTPHEAASSNAQRGLAKPLAGGNNSRQQQRRQDYREDRHEDRYERGKKPQKQQRYDNHRSNKRRDDWNRNRDRINGYPRAADELDTSNSNDSAQPSPEKQLPHQVSPRRAPDNEKLSQREKLMRDIEQRRLECLVCVEQIKAHHGTWSCQNCYHVLHLKCTITWASSSKSAEGWRCPACQNVLQELPREYLCFCGKLKNPPLTRNELAHTCGELCCRVEGCSHACTLLCHPGPCPPCQANVLRSCGCGRTSKLMQCAMKQQLQCEATCDKPLNCAEHRCQQLCHAGKCEPCAEQVEQHCHCGKQQREVLCTKESQDRRSYSCKECCGKPLPCGNHKCKDSCHAGACRPCKLSPQQITSCPCGKLAVPPTQRSSCLDPVPTCEGACSKTLRCGKPAHPHQCASKCHLGQCPPCPKQTAVKCRCGHMDQLIKCRQLSTRADDARCKRRCTKKRSCGKHKCNAECCIDIDHACPLPCNRTLSCGKHKCDQPCHRGNCPPCYRSSFEELYCECGAEVIYPPVPCGTKRPPCKRPCSRTHGCEHVPQHSCHAAASCPPCMMFTTKFCHGNHEQRKTIPCSQASFSCGFPCAKPLACGRHKCIRPCHEGECPQQPGELCRQSCTKPRPLCGHKCAAVCHDGACPETPCKELVEVQCECGNRKQSRSCQELAREHSRIATAQLASSMAEMSRGNYMELSEILAPTKNNKSNKTLDCNEEFSESESQLKSLTKYSEFLRGFAKRNPVLTKSVYETLSDLVKLAKESKQKSRSHSFPTMNREKRQMVHELCEVFGVESVSYDKEPNRNVVATAHKERCWLPATSVMEVLARESGQRRVPVPSNNAWGLKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00496269;
- 90% Identity
- iTF_00607498;
- 80% Identity
- -