Dmel007081.1
Basic Information
- Insect
- Drosophila melanocephala
- Gene Symbol
- retn
- Assembly
- GCA_037043625.1
- Location
- JBAMBD010000552.1:1185494-1195997[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.6e-26 5.5e-23 81.1 0.0 2 89 20 105 19 105 0.96 2 2 3.3 5.1e+03 -2.1 0.1 21 41 268 293 243 306 0.57
Sequence Information
- Coding Sequence
- ATGCTCATCTCGGAGGATCAAATACAGGAGCTCTACGAAATCAATGATGATCCCAAGCGCAAGGAGTTTCTCGATgatttgttttcgtttatgCAAAAGCGAGGCACGCCCATCAACCGCCTGCCCATAATGGCCAAATCGGTGCTGGATCTGTATGAGCTATATAATCTGGTGATAGCGCGCGGCGGCCTCGTCGATGTCATCAACAAGAAGCTCTGGCAGGAGATTATCAAGGGACTGCATCTGCCATCGAGCATCACCAGTGCGGCATTCACCCTGCGCACCCAATACATGAAGTATTTGTACCCCTACGAGTGCGAGAAGAAGAACCTCAGCACTCCCGCCGAACTGCAGGCGGCCATCGATGGCAATCGTCGCGAAGGACGTCGCTCCAGCTACGGCCAATACGAGGCCATGCACAATCAGATGCCGCTGACCACAATTTCGCGACCACCGTTGCCTGGGGGCATGCAACAGATGTCGCCACTGGCGCTGGTCACACACGCGGCGGCTGCGAACAATCAGCAGGCGCAGGCAgcggccgcagcagcagcagcacatcgTCGGCTGATGGGCGGACCGGCCTTTGGTCAGATGCCGAATCTGGTGACGCAGGAGATTGAGAATCGCATGATGGAATATCTGCAGCTCATACAGGCCAAgaaggagcaacagcagcagcaacagggtGCACCAGTTCTGGGCGCCACACATccccaccagcagcagcagcagcagcaacaatcgctGCTTcatcaccaacaacaacaacagcagcaacagcagcagcagcgacagcgctCACAAAGCCCCGAGCTGAGCACACGTGATGCGCTGAGTGCACAGGTGGCGCTTTGGCATATGTACCACAATAGCAGTCCAACCGGTTCGGCGCACACCTCACCACAGCAACGCGAAGCCTTGAACCTTTCCGATTCGCCGCCAACTTTGAATTTGAATCACATAAAACGGGAAAGGGAACGCGATCCGACGCCAGAACCAACGGATCTGGAGGAAACGGCACTTCAGCCGCCGCCGGCGAAACGTGTGGGCAGCGGCCTAATGCCGCCCGGTTTTCCCGCCAACTTCTACTTGAATCCCCACAATATGGCCGCTGTGGCAGCCGCCGCCGGTTTTCATCACCAGGCCGCcaacaatcatcatcatcatcagcagcagcagcagcaacagtcgcagcagcaacaggatgCAGCGTCTGAGGGTGAACCAGAGGATGAGTACGGCAATGGGGAGCATAACACCACCGGCAACTCATCGTCGCTGCAAGATGACAGTGAGCCGCAGCAGCTGAATGGACACCACCtccaccatcatcatcatgatcataACGATCTGCATCATGATCTGCATCAtgagcatcatcatcatcatcagaatCATCTGGACAAGTCGGATGACTCGGCCATTGAGAACTCACCCAGCAcatcgacaacgacaacaacaacaacatcatcatccacATCCAAATCGCATCGTCACAGCTCGCCGGTGTccacaaaaaagaagagcagcgtcaactgcaacagcaacagcggcagcaacaacaacaacaacaacaataacaagacgCAGTCCTTGTCGTGTGCAAAGGatgcaggcaacaacagcagcagcagtgccagcGATGCCAAACTGAATCCCCTCGAGACGCTCAGCCTGCTCTCGGGCATGCAGTTTCAAGTGGCACGCAACGGCACCAATGCAAATggcgagcagcagctgattgTCAATCTCGAACTAAATGGCATTAAGTACTCGGGTGTGCTGGTGGCAGCCacccaagcagcagcagttgcagcagcagccaagccAGAGACAGGACAAGCTGAGCGGGAGCAGGCAGAGACGCcaaccgctgctgctgctgctgctgctgaggagCCAGCAGtgaggagcagctgcagcagcactgACGATGAGCTCAAGCATGAAAACAGCCAGGAACTTGGCCAGAACGAGGCAACCGATGAGGAAACAAcgcaggaacaacaacaacaacaacagcagcagcagcagcaacaacaactcacaGATGAGATTGTGAACGTGCAGGAATTGGGGGGTTCATAG
- Protein Sequence
- MLISEDQIQELYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMPLTTISRPPLPGGMQQMSPLALVTHAAAANNQQAQAAAAAAAAHRRLMGGPAFGQMPNLVTQEIENRMMEYLQLIQAKKEQQQQQQGAPVLGATHPHQQQQQQQQSLLHHQQQQQQQQQQQRQRSQSPELSTRDALSAQVALWHMYHNSSPTGSAHTSPQQREALNLSDSPPTLNLNHIKRERERDPTPEPTDLEETALQPPPAKRVGSGLMPPGFPANFYLNPHNMAAVAAAAGFHHQAANNHHHHQQQQQQQSQQQQDAASEGEPEDEYGNGEHNTTGNSSSLQDDSEPQQLNGHHLHHHHHDHNDLHHDLHHEHHHHHQNHLDKSDDSAIENSPSTSTTTTTTTSSSTSKSHRHSSPVSTKKKSSVNCNSNSGSNNNNNNNNKTQSLSCAKDAGNNSSSSASDAKLNPLETLSLLSGMQFQVARNGTNANGEQQLIVNLELNGIKYSGVLVAATQAAAVAAAAKPETGQAEREQAETPTAAAAAAAEEPAVRSSCSSTDDELKHENSQELGQNEATDEETTQEQQQQQQQQQQQQQLTDEIVNVQELGGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00570178;
- 90% Identity
- iTF_00516774;
- 80% Identity
- -