Dmea000932.1
Basic Information
- Insect
- Drosophila melanica
- Gene Symbol
- -
- Assembly
- GCA_004143765.1
- Location
- SCDT01001500.1:52853-56070[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.3e-05 0.0023 18.5 4.7 1 23 170 193 170 193 0.97 2 13 0.00088 0.089 13.5 3.1 1 23 240 263 240 263 0.96 3 13 0.0007 0.07 13.8 2.4 1 23 330 353 330 353 0.93 4 13 0.0047 0.47 11.2 0.4 2 23 405 426 404 426 0.96 5 13 6.4 6.4e+02 1.3 1.1 1 19 539 557 539 560 0.72 6 13 0.0075 0.76 10.5 0.5 1 23 569 591 569 591 0.96 7 13 0.0002 0.02 15.5 2.1 1 23 598 620 598 621 0.95 8 13 0.00031 0.031 14.9 1.4 2 23 629 650 628 650 0.96 9 13 0.0013 0.13 13.0 0.1 3 22 678 697 676 700 0.89 10 13 0.013 1.3 9.8 1.0 1 23 737 760 737 760 0.96 11 13 0.15 15 6.4 2.1 1 22 767 788 767 788 0.97 12 13 0.00061 0.061 14.0 0.8 1 23 797 820 797 820 0.97 13 13 1.1e-05 0.0011 19.5 0.5 1 23 839 862 839 862 0.97
Sequence Information
- Coding Sequence
- ATGACTAGAACATGCCGAATCTGCGGCGGCGCAGATGGACGCTTCTGGATCGAGACGCCAGTCAATAAATACGCGGAGAAAACATACAATCAATTACTGCTGGAGCTGACCAAGCTGCAGGTCGCCTTGGATCAAGCTGACAAGTTGCCGCCCTGGATTTGTCGAAGCTGCGCCCAGAGATTAGAGCATGCATATGACTTTGTGTTGCAGGCGCGCGAAACACACGAGCTATGGCTGCAAAAGCTGGCAAAAACATGCTCGTCGGAGGACCAGGAAACAGGCACTTTGGAGTGTTTGCGAGAGACGCCAATACAATTACTGGAAATAGAAGGCGTCACAATTAAAATGGAAGAGCCCTCAGAGCCGGTCATGGCCTCAACTGATCAAAGCAATCCAATTGATCCCTTAATCAAGAAAAGCATTGTGAATGATGAcagcgatgacgatgatgatgatgatgtacCGCTTAAGCAGCGTCAGAAAGCACACTGTAAACTACCAACTTTGCACAAGTGCAATAAATGTGGAAAAGCCTTCAAATATGTCACCAATTTGTTCAGGCACAAGCAGCGGGATCACAGCCCGACGAAGGTACATGAAACGGAGGAAAACTCAAAGACTGATCGCGCGGAACCATTTCTGCACAACCTTATAAAAAGCTCAATGGCAACACGAGGCAGCACGACAGAAGTGGACAACGACTCAACGGATGGTTACTACAAGTGCGATCAATGCGACAAATCCTACAAGTACATAATGCTGCTCATCAAGCACAAGCACAAGGCGCATGTGTCCAGTCAGTTGCCAGCGCAGCCCAAGCCCATAGGCAAAAGCAATTCTAGCACGGAGCCAACTGGGGCCAAAACAAGAGGATCCCAGCGTCAACGCTCGAAGGCACCGAGCACCGATTCCCTGGTGCACAGCATCATCAAAGAGATTAACCTACCCGATGAGGACGACGCAGGCAACTCCAGTGCAGACAATTACTACAAATGCGATCAGTGCGACAAGTCCTACAAGTACATCGTCAGTCTCATCAAGCACAACCACAGCGAGCACAAAGCGTACAAAGACTCTgatgaggacgacgacgaagcCACATCCTCGAGATATGCAGCGGATGCAAGTGCCATGTCGAAACCCTCGCGCATCGATCGACGCGTCAAAGGCTTCGATTTGCATCGTTGCAAACCGAATGGCTCCAAGGAAATCCAATGCATGATTTGTCTGCGCAGATTTGTCAAACTGCGCGAGCTGCGAGACCATTTAAAGGCGCATCCCAAAGACTTTACCTTCGAAGCGCACGGCGAGCCGATTGAGCGCATTGCCGAAGGCTTCTACAAGACCGCCGTGGAATCCACAGACGCTGGCCTCAAGCGGCGCATTTTCAATGATCTCAATGTGGGCATGTTTGGCCGCTATTACTCCATTACCAATGAGGCTCGCTACGAGATGAATCTGGACAGCTCAGACACGGATAGTGACGGCGAAGGGGATGTTGTGGAGCGACATAGCTACGCCTGCGAGTTGTGCGACTCGTCTGATGCCGTCTGGCCGCGCAAATATCAACTGCACGAACATCATCGATTGCAGCACACCTGGCTGGAGGCGCCGCATGTCTGCCAGCGATGTGATTCACGTTTTCTGAGCGCGCAGCTGCTGGATCATCACACGCTCAAGCTATGCCAGAACACGCTCAAGCGTTTCATGTGTGACAAGTGTCCACAGCGCTTTTTCTGGCGGCGCAATCTGCGCGCCCATCTAGCGGAGCACAAAAACAAGCAAGAGACCTATCCGTGTGATCAGTGCTCGCGCAGCTTTCAGGATAAGAGCGCCGTAACCAAGCATAAGCTGATGCATCACGATGGCAGCAATGAGCTTCTGCCCTGCCGCTGGTGCACGCGCACCTTCTATCGGCCCGCGCTGCTGCACAAACATGTGCAGCGGCATGGCTTCAGCGGCGAGGATTTGCCCCTGGCCGAGACACTGCTGGCGGATGCCGCTAAGACATCCGGACCGAAGACAATCATTTGCAAGCTGTGCGACATGCAGTTTATTACCATTGCCGATCTGCGACGACACATCTCGATGCAGGGCCACGGCGAACAGGCGGCCAACTATATGATTAGCACCGAGGAGGgctttgagctgctgctggatgaTACGGACGAGAGCGACGATGATGCTGCTGTCGGCACTGCCACTTCCTATAGGTGTGCGTTGTGCGATATGAATTTCCAGCGACGCCGCGAAATGAGCGAACATCAGTATTCGCTGCACACATTCGACAAGCTGCCGTATTCCTGTGAGCATTGCATTTTCAAGACAGTCGACAAGACCATGCTGGAGCATCACCAGCGTACGCAGTGCCTCAACCAGGAGAAGAAATTCAAGTGCTCTCGCTGTGGCTATAAATTCATGTGGAGTGAAAATCTCGAACAGCACATGATCAGCCAGCACCCCAAGTCCTCCAATCAAGCGCCGGTGGCAATAAAGCGAAGCAGACGCTTCAGATATCAGTGTCCGCACTGCTGGCGCTCGTTTGTCGTGCAGCCCAGCCTGGACAAGCACATACGCGATATGCATCGCTAg
- Protein Sequence
- MTRTCRICGGADGRFWIETPVNKYAEKTYNQLLLELTKLQVALDQADKLPPWICRSCAQRLEHAYDFVLQARETHELWLQKLAKTCSSEDQETGTLECLRETPIQLLEIEGVTIKMEEPSEPVMASTDQSNPIDPLIKKSIVNDDSDDDDDDDVPLKQRQKAHCKLPTLHKCNKCGKAFKYVTNLFRHKQRDHSPTKVHETEENSKTDRAEPFLHNLIKSSMATRGSTTEVDNDSTDGYYKCDQCDKSYKYIMLLIKHKHKAHVSSQLPAQPKPIGKSNSSTEPTGAKTRGSQRQRSKAPSTDSLVHSIIKEINLPDEDDAGNSSADNYYKCDQCDKSYKYIVSLIKHNHSEHKAYKDSDEDDDEATSSRYAADASAMSKPSRIDRRVKGFDLHRCKPNGSKEIQCMICLRRFVKLRELRDHLKAHPKDFTFEAHGEPIERIAEGFYKTAVESTDAGLKRRIFNDLNVGMFGRYYSITNEARYEMNLDSSDTDSDGEGDVVERHSYACELCDSSDAVWPRKYQLHEHHRLQHTWLEAPHVCQRCDSRFLSAQLLDHHTLKLCQNTLKRFMCDKCPQRFFWRRNLRAHLAEHKNKQETYPCDQCSRSFQDKSAVTKHKLMHHDGSNELLPCRWCTRTFYRPALLHKHVQRHGFSGEDLPLAETLLADAAKTSGPKTIICKLCDMQFITIADLRRHISMQGHGEQAANYMISTEEGFELLLDDTDESDDDAAVGTATSYRCALCDMNFQRRREMSEHQYSLHTFDKLPYSCEHCIFKTVDKTMLEHHQRTQCLNQEKKFKCSRCGYKFMWSENLEQHMISQHPKSSNQAPVAIKRSRRFRYQCPHCWRSFVVQPSLDKHIRDMHR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00567692;
- 90% Identity
- iTF_00547508;
- 80% Identity
- -