Dmea002986.1
Basic Information
- Insect
- Drosophila melanica
- Gene Symbol
- -
- Assembly
- GCA_004143765.1
- Location
- SCDT01000852.1:50747-52463[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.4e-16 1.4e-12 47.3 0.0 2 45 374 417 373 417 0.95 2 3 0.027 1.1e+02 2.8 0.0 28 37 447 456 446 462 0.89 3 3 1.7e-19 6.7e-16 57.9 0.0 2 42 483 523 482 525 0.96
Sequence Information
- Coding Sequence
- atgAATCACCTAAAATGGATGGGCCACTCGTCCACAATAATGGATATACAGCGCGTTCTGCTGGACCAGCAGAGCAACAATCAGCAATGCGAGGTCTTACTCGTGGCCAAAGACGGCATTAGTGTACGCGCCCATCTCTTCGTGCTGAGCACTTGCAGCGATCTGATGCGGAATTTGCTGGTCGATTTGCCCGCCGGCCAGGAGGCAACTGTCATCCTGCCCGATATTCGGGGTGAGCTGCTCGAGAGCATGTTGTCGTTTATCTATATGGGCGAAACCAGCTTACCTTCTGCCCTGCTCACCGAGTTTCTGGAAGCCATCAATCTGTTGGGCATCAAGTCGGCCATTAGCTTTGAAACCAATCCCACAGCCGTGACCACCTCAAATGTTATAAGCGGCGCTATGGCTGTCGAGGCGGCCAAGTCAATAAGTGGCTTACATATCGCAAATACAGCCCTCATggaggaggaagaggaggaAGAAGAACCTGGCGCTGTGGTCGGTAAATTGGAAGTGGGAACTGCTGTGCTCGCCAATCCACAACATCAGCACCACGAGCATGATGGCCGAACATTAGAATTCCTGGATATGTACGGTGATCAGCCCAAAATCACATATTCCATTGAGCACATGGGCGGCACTACCAGTGGAAACCAGTATATATTAACGGAGAACACGGGAACATTTACCATTACCCAATCTGCATCATCTGTGGCCAAACTGGGCGTATCGGGGACTTCAGCTGTTGTGGAAGCTGTGGCCACCGGTGAGCTGGGGGACGAGGATGTGGATGCTGATGTTACTGACGAGCACGACGAGTCCGAGTCTCAGTTAATCGAGGAGGAGTATGTTGCCTCCGCAGATCCCCTAATAGAAATGACCGCGGATGCAGAAGGGGATGTTGATATGACCGAAGACGGAATGCACGAAGGCGAAGCCGGGGATGAAGAAGATGATGATGAGCTCCTAGATGTCAAACCACACAAAGTTCAGCTAGATATGAAgatgttaaaaacaaagtcTCGCCAGCGTTCGCCTTCATCGAAGGTTACGAAAAAGACAATGACAAAGCAACATATACAGCAGGCCGCACTCAAAAAGGAAATGAAGGAAGATATCAATGAAGCCCTTGACCTGGCCGCTGCGGCAGTACTCCATGAAGGAATCAGTCTTCAAAAGGCCGCCGATCGTTTCGACATATCAAAAACTGTGCTATGGCGACGTGTACGCTCGAATCCAGCCTACATGCGAATAAAGCGGGAAAAGCCATCGCTTTCGGAAGCATACGAACGTTTAAAGAGCGGTGACTCGCTGAAGAGCATTAGCCAGGATCTGCACATACCCATGTCAACGCTGCACCGGCACAAAGTGCGGCTGGCAGAACAAGGTCGTCTGCCCGATTTCGTTTCCTGCCGGCGGCGGGATAGCACTCCGAAAGATGAGCTGCGCGACAAACTGGCCAAGGCGGTGCACGCTTGCTTAAACGATGGCATGTCCCAAAACCATGCGGCAAATCTCTTCGAAATTCCCAAGAGCACGCTATGGCGGCACTTGCAACGTCGCGTTACCGAGGCGGAGCGTAAAGTGAAGGAGGAACAAGAGGAAGAAGACGATGAAGATGCTCTCAACTAA
- Protein Sequence
- MNHLKWMGHSSTIMDIQRVLLDQQSNNQQCEVLLVAKDGISVRAHLFVLSTCSDLMRNLLVDLPAGQEATVILPDIRGELLESMLSFIYMGETSLPSALLTEFLEAINLLGIKSAISFETNPTAVTTSNVISGAMAVEAAKSISGLHIANTALMEEEEEEEEPGAVVGKLEVGTAVLANPQHQHHEHDGRTLEFLDMYGDQPKITYSIEHMGGTTSGNQYILTENTGTFTITQSASSVAKLGVSGTSAVVEAVATGELGDEDVDADVTDEHDESESQLIEEEYVASADPLIEMTADAEGDVDMTEDGMHEGEAGDEEDDDELLDVKPHKVQLDMKMLKTKSRQRSPSSKVTKKTMTKQHIQQAALKKEMKEDINEALDLAAAAVLHEGISLQKAADRFDISKTVLWRRVRSNPAYMRIKREKPSLSEAYERLKSGDSLKSISQDLHIPMSTLHRHKVRLAEQGRLPDFVSCRRRDSTPKDELRDKLAKAVHACLNDGMSQNHAANLFEIPKSTLWRHLQRRVTEAERKVKEEQEEEDDEDALN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00549654;
- 90% Identity
- iTF_00530367;
- 80% Identity
- iTF_00541862;