Dmay008405.1
Basic Information
- Insect
- Drosophila mayri
- Gene Symbol
- -
- Assembly
- GCA_008042485.1
- Location
- VNJN01003017.1:70893-71580[+]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.3 2.1e+03 -1.2 0.9 4 15 8 19 5 22 0.62 2 2 1.4e-12 1.3e-09 37.9 4.8 4 70 118 180 115 180 0.87
Sequence Information
- Coding Sequence
- ATGAATTCACTGGACAAAGTGCAAACCCTGCGCTGCCTGCAATGCATGAAGGAGATCCAGTGCTCACCCGTTGACCCCGGCCAGATGGTGCTCCACATTCAACAGGATCATCCCGAGGTCTTTGCAGTGGCCAAGGAGAAGATAAAGAACTTGCACACACTTATCGGCAAGGATTGCAGCGCGACGCATCTCTCGGAGACACAGATGGCCACGGCAGCAGTCAGAACTTATTTAACCAATAAGAAGATACAAGACCGCGTGTCCCCCCGGTCCagtccctgctcctgctccaagGAGGTGACCCGCAAGCAGAGCTTCAGGGCATCCATCACGCACTGGGCGCCGGCGGAGGGGAATATCTTCTGTCCGAGCTGCGGCTTCAGCCAACGGCCGCTGATCAAGACCGCCTCGGAGATGACGGCCACCGGAGCCGTGGCCACCTGCATCTTTGCCTGCTGGCCCCTGTGctgtctgccgttcctggaGAGCCGCGAGTATCTTTACTGCTCCAACTGCCGCGCTTTCCTGGGCATCTACGACCGGGAGAAGAACTGTGTGAAGCCCAGCAAGGAGTTCGTGGCCTCCAAACAGCAAGGGACCTCAGATATGCAGACCAGCAAATGTGtttaa
- Protein Sequence
- MNSLDKVQTLRCLQCMKEIQCSPVDPGQMVLHIQQDHPEVFAVAKEKIKNLHTLIGKDCSATHLSETQMATAAVRTYLTNKKIQDRVSPRSSPCSCSKEVTRKQSFRASITHWAPAEGNIFCPSCGFSQRPLIKTASEMTATGAVATCIFACWPLCCLPFLESREYLYCSNCRAFLGIYDREKNCVKPSKEFVASKQQGTSDMQTSKCV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00478391; iTF_00489055; iTF_00613185; iTF_00594923; iTF_00491898; iTF_00594220; iTF_00562137; iTF_00613865; iTF_00524795; iTF_00492637; iTF_00485536; iTF_00618014;
- 90% Identity
- iTF_00478391; iTF_00489055;
- 80% Identity
- -