Dmay014155.1
Basic Information
- Insect
- Drosophila mayaguana
- Gene Symbol
- -
- Assembly
- GCA_037075325.1
- Location
- JBAMCG010000120.1:1238278-1239537[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.2e-05 0.31 11.2 1.0 14 48 222 257 218 263 0.87 2 4 0.00037 2.2 8.5 0.1 22 44 287 309 284 317 0.86 3 4 0.024 1.4e+02 2.7 0.0 23 44 316 337 310 342 0.83 4 4 0.0025 15 5.8 0.1 21 43 342 364 339 371 0.90
Sequence Information
- Coding Sequence
- atgtccATTTCTGAGGAAAATTCATCCCTTGAGGAAGCAAAACTACAACCGTGCCGCGTTTGCAATGTGCCATCCACACAGTCCTATTCGCTTTACAAGCCACACATCATCGCCGGCGAATTGACAACGCTCGGTGCGCTGCTCAGCTACTGCGACATTTTGCAGGTGCTCGAGGAGGAGGAATTCCTGCCCACACATATATGCCAGCGGTGCGTGGAGTCGCTCGCCCAGGTGTACGATTTCAAGCGTACTGCGCTACGCACTGATCACGTGCTTAGGAAACGTAATGCGCGACCATCTAGAGCCACCATATCCCGTTCTCCATCGCCGGCGAATCTTGCCGATGTTGAGGCTGTACCTGAGCCTGAGCTTGAACCTGACgttgagcctgagcctgagcctgacgttgagcctgagcctgaggcGAATGCTGATGAATATGTCTACATGCTCGAAGAACCAGAATCGCCCGTGAACAGCGTCGCATCCCATCAACTGGATGACGATCACGAACCCGCGCCCGAGGAAATACTGGATAGTGAAGTGGAATTTGACATTGAAGATCCCTCTGTTGAGATCTTTGAGGTGAACTACCATAGTCCCGAGAAATATGAAAACGAGCCGACATTGAGTATCATACAAGCGGACATCGGAATCAAGATGCGACCGCAGCAGCGCCGTAAGTCCCACAATCCCGCCCTTCAATGTCCGATTTGTAGCAAACAGCTGAGCACCAGTAATTCATTCAAATACCACATGCAACTGCACGGCGACAATCGACCCTTTGTCTGCAGCATTTGCGGCGATTCGTTTAAGACACGCAACGCTTATGATGGCCACATAACAATACACAATCCGAACAATCCCAACAAGTGTACATTTTGTGGTAAGATCTACAGGCAGGCATCATCGCTGCGCTCGCACCTGTTTAGCCACAGCGGCGTCAAGCCCTTCACTTGTGACATCTGCGGCAAGGGCTTGACTCAAAAGTCTGGCTACAAAAAACACATGCTCACCCATACGGGTGAGAAGCCGCATACCTGCGACACCTGCGGACGCAATTTTCGCTACTCAAGCAACCTGATCGCGCACAAGCGCTCCCACACACGAAAAACTCCCACCAACCCGAAGCCCGTGgacaacaaaaagccaaaaagtcaAAAGGCGGCCCAAACATGA
- Protein Sequence
- MSISEENSSLEEAKLQPCRVCNVPSTQSYSLYKPHIIAGELTTLGALLSYCDILQVLEEEEFLPTHICQRCVESLAQVYDFKRTALRTDHVLRKRNARPSRATISRSPSPANLADVEAVPEPELEPDVEPEPEPDVEPEPEANADEYVYMLEEPESPVNSVASHQLDDDHEPAPEEILDSEVEFDIEDPSVEIFEVNYHSPEKYENEPTLSIIQADIGIKMRPQQRRKSHNPALQCPICSKQLSTSNSFKYHMQLHGDNRPFVCSICGDSFKTRNAYDGHITIHNPNNPNKCTFCGKIYRQASSLRSHLFSHSGVKPFTCDICGKGLTQKSGYKKHMLTHTGEKPHTCDTCGRNFRYSSNLIAHKRSHTRKTPTNPKPVDNKKPKSQKAAQT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00540605;
- 90% Identity
- iTF_00540605;
- 80% Identity
- iTF_00540605;