Dmau002233.1
Basic Information
- Insect
- Drosophila mauritiana
- Gene Symbol
- -
- Assembly
- GCA_004382145.1
- Location
- NC:22266124-22269871[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00016 0.0096 16.0 0.9 2 23 177 199 177 199 0.96 2 15 0.0019 0.11 12.6 2.7 1 23 214 237 214 237 0.96 3 15 0.0077 0.47 10.6 3.2 1 23 307 330 307 330 0.96 4 15 0.0016 0.097 12.8 1.4 2 23 381 402 380 402 0.97 5 15 0.016 1 9.6 0.6 1 23 547 569 547 569 0.94 6 15 0.00022 0.013 15.5 0.7 1 23 576 599 576 599 0.96 7 15 0.00015 0.0095 16.0 0.5 2 23 608 629 607 629 0.96 8 15 0.0003 0.018 15.1 0.1 2 22 656 676 655 679 0.90 9 15 0.025 1.6 9.0 1.0 1 23 713 736 713 736 0.96 10 15 5.8 3.5e+02 1.6 3.3 1 22 743 764 743 764 0.94 11 15 0.052 3.2 8.0 0.2 1 23 773 796 773 796 0.96 12 15 1.3e-05 0.00082 19.3 0.5 1 23 817 840 817 840 0.97 13 15 0.031 1.9 8.7 0.2 1 23 850 872 850 872 0.94 14 15 5.4e-05 0.0033 17.4 3.7 1 23 878 900 878 900 0.99 15 15 5.2e-05 0.0032 17.5 1.0 1 23 906 928 906 928 0.97
Sequence Information
- Coding Sequence
- ATGACCAGGACGTGCAGAGTATGTGGCTGCGACGACGGACGCTACTGGATTGAAACGCCCGTGGAGAAGTACGCGGAGAAGACCTTCGTCCAGCTGCTGGTCGAGATAACGCGAATCGAGGTGGTCATGGCGCAAGCTGAGAAGTTCCCACAGTGGCTGTGCAAAGCGTGTGCCGATAAGCTGGAGAGCACCTACGAATTTGTGCTGCAGGCACGTCAAACACACGAGCTGTGGCTGCAGAAAATCGGGGATTCTTTGAATGGGGATGACGAAATGGAGGGCACTAGGGCCTTGGAGTGCCTGCGTGAGACACCCATCCATCTGTTCGAAATAGAGGGCGTGACCATCAAGACGGAGGAACTGGCTTCAACGCAAAAGGCGCCCAAGGTAGATCCTTTAGTGCGCCCGCGCATTGTCAAACGGAGTATTGTACACTTTAGCGATTCAGATGAAGACCTGGATGATGTGCCGCTGCGCCAACGTAAGATAGCAGCCTCGGTCTGCGGCTCTGACAAGGCGAAGCAAAATGTTTGCGAGCTGTGCAACAAGGTCTTCAGATATGTCACCAATCTATATCGTCACAAGCAGAGGGACCACGGCATTCTGGGCAAGAACGGAGAAGATTATGAAGAAGACTATTACAAGTGCGATCTGTGCGATAAAACCTACAAGTACGTGATGGCGCTGGTTAAGCACAAACACAAAGAGCACGGATCCAGTCTCCTGCCCACCAAGTCCGGGCGAAAGATGCCCGGAAGGCCGCCAACTTTGCCCGAGGATGCCAATCCATACAGTCCAGCATCCACCTCTGAAACATCCACTCATCGAAGCAGAACCAACAACGACACCCTGGTACACAGCATCATCAAGACAGTGGAACTCTCAGATGAGGATGGCCACAGTGGTGAAGATAGCTACTACAATTGCGATCAGTGTAGTAAATCCTATAAGTACATAGTCAGCTTGATCAAGCACAAGCACAAAGAGCACCTAGACAAGCAGTCGGATGACGAGGACGATCGGCCTCTGGCCTCCACATCCGCCTCGGCAAATGCACCAGCTGCGAAGCCGTCTAGGATCAACCGAAGAGTCGACGGGTTCGACTTTCATCGCAGCGAGCCTAATGGAGCCAAGGAAATCAAGTGCATGATATGCTTGCGACGGTTTACAAAACTGCGAGAGCTTAGGAATCATCTGCAGAACCATCCCACTGATTTCGACTTTGAGGCGCATGGGGAGCCTATCGAGCGCATTGCGGAAGGATTTTTCAAGACAGCCGTTGAGTCCACGGCAGAGGGCTTAAAGCGGCGAATCTTTAGAGATCTCAGAATGGGCGTCTATGGACGATACTACTCCATCACAAATCAAGCGCGTTATGAAATGACCCTAGATAGTTCGGATACGGACagtgatggcgatggcgacgACGATGTCGTCATCCGACGAAGTTACTCCTGCGAACTGTGCGACTCTCCGGAGGCTAGGTGGCCGCGCAAGTACCTGCTACACCAGCACCATCAGAAGGAGCACACCTGGCTAGACGCCCCTCATGTCTGCCAGCGCTGCGACTCGCGGTTCCTCAATATCCAGCTTCTCGAGCACCACACCAGCCAGTTGTGCCAAAACACTTTGAAGCGCTTTATGTGCGACAAGTGCCCTCAGCGATTCTTTTGGCGTCGCAATCTGCGCGCACATCTTGTCGAGCACAAGAGCAAGCAAGAATCTTATCCATGTGACCAGTGCTCTCGTAGCTTTCAAGACAAGAGCGCCGTGACCAAACATAAGCTAATGATGCATCGGGATAGTAACATGCAGCTCCTTCCCTGCCGCTGGTGCACCCGTACCTTCTACCGTCCTGCCCTGCTGTACAAACACTTACAAAGACACGGATTCACTGGTCAGGACCTACCGCTGGCTGAAACCTTGCTAGCGGATGCCTCAAAGCCGGCGGGCCCCAAAAGCGTCCAGTGCAAGATTTGTGACATCCAGTTTGTCAGCGTGGCGGACCTACGAAGGCACATATCTATGCAGGGCCACAGCGATCAACCCTCGGCGTACATGATTAGCACAGCAACTGGCTTTGAGCTACTGCTGGATGACACAGACGACAGTGATGAGGAAACATCGGGCAGGACGTACTCTTGCGACCTTTGTGTTCTGAACTTTCGACGGCGACGAGAGATGAGTGAGCACCAGTACTCCCTCCACAGCTTTGACAAACTGCCACATAACTGCGAGCACTGCATTTTTAAGACGGTGGATAAGAACATGCTGCATCAGCATCTGCGCACGCAGTGTATGAACACCGAAAAGAAGTTTGTCTGCATGCGTTGCGGCTACAAGTTCATGTGGGAGGAGAACTTGGCCCAGCACCTTGCCACCCAGCATTCCAAGCAACCCGCCGTTCCAGAACAGCAGCCACCGCTGAGGAGAAAGAGGCGCTTCCGCTACCAGTGCCCCCATTGCTGGCGTTCCTTTGTCGTTCAGCCCAGCCTGGATAAGCACATTCGGGACATGCATGTGGCCAAGAAAAATCCAGGAAAAAAGTATCTCTGCTCGCTGTGCGGCCTGGAGTCGCTGACCCCCAACAAGCTGAACATCCATATGCGGCGCCACATGGGCGAGAAGCCCTTCAAGTGTGATCTCTGCGACATGCGCTTCACGGTCCACTACGAGTTGAAGGTGCACCGCCGGAAGCACACTGGCGAGCGACCCTACCAATGCACCTTTTGCGCCAAAGACTTCGCACGACCAGACAAACTGAGGCGGCACGTCTTCATGCACAACGTCAAGTCGTAG
- Protein Sequence
- MTRTCRVCGCDDGRYWIETPVEKYAEKTFVQLLVEITRIEVVMAQAEKFPQWLCKACADKLESTYEFVLQARQTHELWLQKIGDSLNGDDEMEGTRALECLRETPIHLFEIEGVTIKTEELASTQKAPKVDPLVRPRIVKRSIVHFSDSDEDLDDVPLRQRKIAASVCGSDKAKQNVCELCNKVFRYVTNLYRHKQRDHGILGKNGEDYEEDYYKCDLCDKTYKYVMALVKHKHKEHGSSLLPTKSGRKMPGRPPTLPEDANPYSPASTSETSTHRSRTNNDTLVHSIIKTVELSDEDGHSGEDSYYNCDQCSKSYKYIVSLIKHKHKEHLDKQSDDEDDRPLASTSASANAPAAKPSRINRRVDGFDFHRSEPNGAKEIKCMICLRRFTKLRELRNHLQNHPTDFDFEAHGEPIERIAEGFFKTAVESTAEGLKRRIFRDLRMGVYGRYYSITNQARYEMTLDSSDTDSDGDGDDDVVIRRSYSCELCDSPEARWPRKYLLHQHHQKEHTWLDAPHVCQRCDSRFLNIQLLEHHTSQLCQNTLKRFMCDKCPQRFFWRRNLRAHLVEHKSKQESYPCDQCSRSFQDKSAVTKHKLMMHRDSNMQLLPCRWCTRTFYRPALLYKHLQRHGFTGQDLPLAETLLADASKPAGPKSVQCKICDIQFVSVADLRRHISMQGHSDQPSAYMISTATGFELLLDDTDDSDEETSGRTYSCDLCVLNFRRRREMSEHQYSLHSFDKLPHNCEHCIFKTVDKNMLHQHLRTQCMNTEKKFVCMRCGYKFMWEENLAQHLATQHSKQPAVPEQQPPLRRKRRFRYQCPHCWRSFVVQPSLDKHIRDMHVAKKNPGKKYLCSLCGLESLTPNKLNIHMRRHMGEKPFKCDLCDMRFTVHYELKVHRRKHTGERPYQCTFCAKDFARPDKLRRHVFMHNVKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00548234;
- 90% Identity
- iTF_00591855;
- 80% Identity
- -