Dmau013017.1
Basic Information
- Insect
- Drosophila mauritiana
- Gene Symbol
- -
- Assembly
- GCA_004382145.1
- Location
- NC:21121293-21125795[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2.5e-05 0.0015 18.5 1.1 1 23 93 115 93 115 0.97 2 11 8e-08 4.9e-06 26.3 1.7 1 23 121 144 121 144 0.97 3 11 9.4e-06 0.00058 19.8 0.6 1 23 150 172 150 172 0.98 4 11 1.5e-05 0.00093 19.2 0.5 1 23 178 200 178 201 0.95 5 11 1.3e-06 8.1e-05 22.5 0.9 1 23 208 230 208 230 0.97 6 11 0.006 0.37 11.0 1.0 1 23 236 259 236 260 0.95 7 11 0.0016 0.097 12.8 0.2 1 23 265 287 265 287 0.98 8 11 2.5e-06 0.00015 21.6 2.8 1 23 293 315 293 315 0.98 9 11 1.6e-05 0.00099 19.1 4.7 1 23 321 343 321 343 0.99 10 11 0.0016 0.097 12.8 0.9 1 23 349 374 349 374 0.95 11 11 0.0024 0.15 12.3 0.3 1 20 380 399 380 401 0.94
Sequence Information
- Coding Sequence
- atggTACGCAGCCGTCGCAGTGTGTCCAAGGAGGATGCCGTCTCTCTGCTCACGGACAGCGGCATATCGCTGTCATCGCCGCCGGCGGCGAGGGAATCCTCACCAGGCCCCACGCTTGCGATCCAGAGGAGGAAGAGCAGCTTGGCAAGTCTGCGCGATGCCTGTGtggacgacgaggaggacgacgGCGGAGAACAGGACTCAAAAGATCATGACTACGTGCAGCCGCAGCTTAAGAAGTCTGCCCGAAAGGACGAACCGGTGAAACGCAAGCACCATGTCTGCAGTCAATGCTCCAAGGAGTTCGGTGGCAAGACGGATCTGCAACGCCACATGCTTATCCACTCGGACGAACGACCTCACAAGTGCAAGGATTGTGGCAAGAGCTACCGCCAGGCGGTCAACCTGAAGAACCATATCACCACCGCCCACGAGCATCGGAAGCAGTTCGTCTGTTCTCAGTGCCCAAAATCATTCGCCCTCAAGGAGCGCCTGCGGCTCCACATGCGCCTCCACTCTGGCGAGAAGCCCTATCCTTGCGCCCTCTGCGACAAAAAATTCGCGCGAGGAGGTCAActgcaacagcacATGGTTTCTCACCACAAGACTAGTATCCAGCAGTTCAACTGCACCAAGTGCTCGGCTAGCTTCTCAACCAACGCCAATTTACGGGTGCACATGGAGCGACACGAGCAGGGCATGGAGCACCGGTGCAGCATCTGTGAGAGCCAATTCGCCAACGAGCTGGCTCTGCGAGCCCACATAAACCAGGAGCACCACAAGCTGACGCAATTTGAGTGCGAGATATGCCATAAGATGATCGAGCCGGACGAAGATTTGGCCACTCACATGCAGAGGCACGCCGCTGTTAAGACACACGTGTGCGAGGTGTGCAACACATATTTCACCCAGAAGAGCCAGTACAATGTCCACATGCGGATGCACACGGGAGAGCGCCCCTATCAGTGTAGGATCTGCCACCAGACCTTTGCCCATTCAAGCGTACTAAAACTGCACATCCGGAAGCACACGGGGGAAAAACCCTTTCGCTGCCAGCTGTGCGAAGACGAAGTAGCCTTTTCTCAGCTGGCGCACCTAAAGAACCACATGAAGAAGATACACAAACAGCAAAAGCCCTACATGTGCGAAGGCTGCCACGAGTTTTTTAAGATCAAGGTGGAGCTGCAGTCGCATGTTGAGCAGTGCGCCAAGTGTCCAGTTGACGGGGACAAGCCTAGTGGCAATCAGTCTGAAGATGCGCAAATTCTTTCTGTGTTAAGATTTAACATGGCAGTAGTACTGAAAAAAATTAGCTCCGCTCAAAAGCTGCGTCAGTTGGGCTACGAGAAGCGTCTAATCGATAACGTTATCATTGCATCCTTGAAGCTGGCTCAGCGACAATCCCATGACGACGTCACGATGACACCATTGGCCAGACTCCGGCTAAATGTGGAGGAATTTCTTAAGTGGATTGTGCCAGCCCCCACAATGCAGAAATTTAGCGACGAATTGTTGTCTATCGACACCATTCTCGAGAAAATTGCCACCATGTATATGAAACAGAAGTAG
- Protein Sequence
- MVRSRRSVSKEDAVSLLTDSGISLSSPPAARESSPGPTLAIQRRKSSLASLRDACVDDEEDDGGEQDSKDHDYVQPQLKKSARKDEPVKRKHHVCSQCSKEFGGKTDLQRHMLIHSDERPHKCKDCGKSYRQAVNLKNHITTAHEHRKQFVCSQCPKSFALKERLRLHMRLHSGEKPYPCALCDKKFARGGQLQQHMVSHHKTSIQQFNCTKCSASFSTNANLRVHMERHEQGMEHRCSICESQFANELALRAHINQEHHKLTQFECEICHKMIEPDEDLATHMQRHAAVKTHVCEVCNTYFTQKSQYNVHMRMHTGERPYQCRICHQTFAHSSVLKLHIRKHTGEKPFRCQLCEDEVAFSQLAHLKNHMKKIHKQQKPYMCEGCHEFFKIKVELQSHVEQCAKCPVDGDKPSGNQSEDAQILSVLRFNMAVVLKKISSAQKLRQLGYEKRLIDNVIIASLKLAQRQSHDDVTMTPLARLRLNVEEFLKWIVPAPTMQKFSDELLSIDTILEKIATMYMKQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00580113;
- 90% Identity
- iTF_00505546;
- 80% Identity
- -