Basic Information

Gene Symbol
grh_1
Assembly
GCA_004382145.1
Location
NC:16169088-16208246[+]

Transcription Factor Domain

TF Family
CP2
Domain
CP2 domain
PFAM
PF04516
TF Group
Beta-Scaffold Factors
Description
This family represents a conserved region in the CP2 transcription factor family.
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 0.022 1.5e+02 1.1 0.4 74 109 452 487 420 522 0.69
2 3 0.1 6.9e+02 -1.1 0.4 85 110 743 768 731 786 0.55
3 3 4.3e-63 2.9e-59 199.7 0.5 24 221 895 1087 881 1089 0.93

Sequence Information

Coding Sequence
ATGTCCACATCCACCGCCACAACGAGCGTTATCACGTCCAACGAGCTCTCGCTGTCCGGCCACGCacacggccacgcccacggTCACGGTCACGCCCACCAGTTGCACCAGCACAACCACAGCCGCCTAGGAGTTGGCGTTGGTGTCGGCATCCTCAGCGACGCATCCCTATCGCCCATCCAACAAGGCAGTGGCGGCAACAGCGGAGGAGGCAACACGAACAGTTCACCACTGGCGCCCAACGGAGTGCCACTGCTCACAACAATGCACCGATCACCGGACTCACCGCAGCCAGAATTGGCCACCATGACGAACGTCAACGTGCTGGATCTGCACACGGATAACTCCAAGCTGTACGACAAGGAGGCTGTCTTTATCTACGAAACGCCCAAGGTGGTGATGCCAGCGGATGGCGGCGGCAACAATTCCGATGAAGGTCATGCCATCGATGCGCGGATTGCGGCCCAAATGGGCAACCaagcccagcagcagcaacagcagacgGAACACCAGCCGCTGGCCAAGATCGAGTTCGATGAGAACCAGATAATCCGGGTCGTGGGACCAAATGGCGAGCAGCAGCAAATCATCTCGCGGGAGATCATCAATGGGGAGCATCATATCCTGTCGCGCAACGAGGCTGGTGAGCACATTCTCACACGGATCGTCAGTGATCCCTCCAAGCTGATGCCCAATGACAATGCGGTGGCCACGGCCATGTACAACCAGGCCCAGAAGATGAACAATGATCACGGGCAGGCGGTGTATCAGACATCACCATTGCCGCTGGACGCATCCGTATTGCATTATAGTGGCGGCAATGATTCGAATGTGATTAAGACGGAGGCCGATATCTACGAGGATCACAAGAAACACgcggctgcagcagcagctgctgccggCGGAGGATCCATCATATACACCACCTCCGATCCGAACGGAGTGAATGTGAAACAACTGCCCCATTTGACGGTACCCCAAAAACTCGATCCCGACCTCTATCAAGCCGATAAGCATATAGATTTGATCTACAACGATGGCAGCAAGACGGTGATTTACTCCACCACGGATCAGAAGAGTTTGGAAATATACTCGGGCGGCGACATCGGCAGTCTGGTGTCCGACGGCCAAGTGGTGGTCCAGGCGGGACTTCCGTATGCCACCACCACCGGAGCCGGCGGCCAGCCCGTCTACATCGTGGCCGACGGTGCCTTGCCAGCGGGAGTCGAGGAGCATCTGCAAAGCAGTGGAAAGCTCAATGGCCAGACCACACCTATCGATGTCTCTGGCCTATCGCAAAATGAGATTCAAGGCTTTCTGCTCGGCTCACACCCCTCGTCATCGGCGACGGTCAGCACAACCGGCGTTGTCTCCACGACAACGATCTCgcatcaccagcagcagcagcagcagcaacagcaacagcagcagcagcagcaacaccagcagcagcagcagcaacatcccGGCGACATTGTTAGTGCCGCTGGCGTGGGGAGCACGGGCTCCATTGTCTCCTCTGCggcgcaacagcagcagcagcaactaaTTAGCATCAAACGAGAGCCCGAAGACTTGCGCAAGGATCCCAAGAATGGCAACATTGCCggtgcagcaacagcaaatggACCCGGATCGGTCATAACGCAGAAGATCTTGCACGTGGATGCACCAACGGCAAGTGAAGCTGATAGGCCCAGCAcacccagcagcagcagcaccagcaccgAAAACACTGAATCGGACACACAGTCAGTATCAGGATCAGAATCAGGATCGCCGGGAGCCAGGACCACAGCCACACTAGAGATGTATGCAACCACGGGCGGCACACAGATCTACCTACAGACCTCACATCCCAGCACGGCGAGCGGAGCGGGCGGCGGCGCCGGACCCGCTGGAGCcgccggcggcggcggtgtGTCCATGCAGGCGCAAAGTCCCAGTCCGGGTCCCTATATCACGGCCAATGACTATGGCATGTACACGGCCAGTCGCCTGCCACCAGGTCCCCCgcccaccagcaccaccacgtTCATAGCGGAGCCCTCCTACTATCGGGAATACTTTGCGCCGGACGGCCAGGGTGGCTATGTGCCGGCCAGCACGAGGTCCTTGTACGGCGACGTGGACGTATCCGTATCTCAGCCCGGCGGAGTGGTCACCTATGAGGGCCGCTTCGCCGGCAGCGTTCCCCCgcccgccaccaccaccgtgCTAACCAGCgtgcaccaccaccagcaacagcagcagcagcaacaacagcagcagcaacaccagcagcaacagcaccaccagcagcaacagcaccatTCGCAGGATGGCAAGAGCAACGGCGGAGCCACGCCACTCTATGCCAAAGCCATCACGGCGGCGGGTCTAACGGTGGATCTGCCAAGTCCGGATTCGGGCATTGGCACGGATGCCATCACACCGCGGGATCAGACCAATATCCAACAGTCCTTCGATTACACGGAATTGTGCCAGCCGGGCACGCTGATCGATGCCAATGGCAGCATACCCGTCAGCGTGAACAGCATCCAGCAGAGGACGGTGGTCCATGGCAGCCAGAACAGCCCAACCACATCGCTGGTGGACACCAGCACCAATGGATCCACGCGATCGCGGCCCTGGCACGACTTTGGACGCCAGAATGATGCCGACAAAATACAAATACCAAAAATCTTCACAAACGTGGGCTTCCGATATCACCTGGAGAGCCCCATCAGCTCATCGCAGAGGCGCGAGGACGATCGCATCACCTACATCAACAAGGGTCAGTTCTACGGAATAACGCTGGAGTATGTGCACGATGCGGAAAAGCCCATCAAGAACACCACCGTCAAGAGTGTGATCATGCTAATGTTCCGCGAGGAGAAGAGTCCCGAGGATGAGATCAAGGCCTGGCAATTCTGGCACAGTCGTCAGCATTCCGTGAAGCAGAGAATCTTGGATGCAGATACGAAGAACTCGGTTGGCCTCGTTGGCTGCATCGAGGAAGTGTCGCACAATGCCATCGCCGTCTACTGGAATCCGCTGGAGAGCTCCGCCAAGATCAACATTGCGGTTCAGTGTTTGAGCACGGATTTCAGCAGTCAAAAGGGAGTTAAGGGCCTGCCGCTGCACGTACAAATCGACACATTCGAGGACCCCAGAGATACGGCGGTCTTCCACCGCGGCTACTGTCAGATAAAGGTCTTCTGCGATAAGGGCGCCGAGCGAAAGACGCGCGATGAGGAGCGGCGGGCCGCCAAGCGAAAGATGACAGCCACGGGCAGAAAGAAGCTGGACGAGCTTTACCATCCGGTGACGGATCGGTCCGAGTTCTATGGCATGCAGGACTTCGCCAAGCCGCCGGTGCTGTTCTCGCCCGCCGAGGACATGGAGAAGGTAGGTCAGCTGGGCATTGGCGCTGCCACCGGCATGACATTCAACCCCCTGAGCAACGgcaactccaactccaactcgCACTCGTCCTTGCAGAGCTTCTACGGCCATGAGACTGACTCGCCGGACCTGAAGGGGGCCTCACCGTTCCTGCTCCACGGCCAGAAGGTGGCCACGCCGACGCTCAAGTTCCACAACCACTTTCCGCCCGACATGCAGACCGATAAGAAGGATCACATACTGGACCAGAACATGCTGACCAGCACACCCCTGACCGACTTCGGTCCGCCGATGAAGCGCGGCAGGATGACGCCGCCGACCTCGGAGCGCGTGATGCTGTACGTGCGGCAGGAGAACGAGGAGGTGTACACGCCGCTGCACGTGGTGCCGCCCACCACGATCGGCCTGTTGAATGCGAttgaaaacaaatacaaaatctCAACAACGAGCATAAATAACATTTATCGCACAAACAAGAAGGGGATTACTGCGAAAATTGACGATGACATGATATCGTTCTACTGCAACGAGGACATCTTCCTGCTGGAGGTGCAACAGATCGAGGACGACCTGTACGATGTGACGCTCACGGAGCTGCCCAACCAGTAG
Protein Sequence
MSTSTATTSVITSNELSLSGHAHGHAHGHGHAHQLHQHNHSRLGVGVGVGILSDASLSPIQQGSGGNSGGGNTNSSPLAPNGVPLLTTMHRSPDSPQPELATMTNVNVLDLHTDNSKLYDKEAVFIYETPKVVMPADGGGNNSDEGHAIDARIAAQMGNQAQQQQQQTEHQPLAKIEFDENQIIRVVGPNGEQQQIISREIINGEHHILSRNEAGEHILTRIVSDPSKLMPNDNAVATAMYNQAQKMNNDHGQAVYQTSPLPLDASVLHYSGGNDSNVIKTEADIYEDHKKHAAAAAAAAGGGSIIYTTSDPNGVNVKQLPHLTVPQKLDPDLYQADKHIDLIYNDGSKTVIYSTTDQKSLEIYSGGDIGSLVSDGQVVVQAGLPYATTTGAGGQPVYIVADGALPAGVEEHLQSSGKLNGQTTPIDVSGLSQNEIQGFLLGSHPSSSATVSTTGVVSTTTISHHQQQQQQQQQQQQQQQHQQQQQQHPGDIVSAAGVGSTGSIVSSAAQQQQQQLISIKREPEDLRKDPKNGNIAGAATANGPGSVITQKILHVDAPTASEADRPSTPSSSSTSTENTESDTQSVSGSESGSPGARTTATLEMYATTGGTQIYLQTSHPSTASGAGGGAGPAGAAGGGGVSMQAQSPSPGPYITANDYGMYTASRLPPGPPPTSTTTFIAEPSYYREYFAPDGQGGYVPASTRSLYGDVDVSVSQPGGVVTYEGRFAGSVPPPATTTVLTSVHHHQQQQQQQQQQQQHQQQQHHQQQQHHSQDGKSNGGATPLYAKAITAAGLTVDLPSPDSGIGTDAITPRDQTNIQQSFDYTELCQPGTLIDANGSIPVSVNSIQQRTVVHGSQNSPTTSLVDTSTNGSTRSRPWHDFGRQNDADKIQIPKIFTNVGFRYHLESPISSSQRREDDRITYINKGQFYGITLEYVHDAEKPIKNTTVKSVIMLMFREEKSPEDEIKAWQFWHSRQHSVKQRILDADTKNSVGLVGCIEEVSHNAIAVYWNPLESSAKINIAVQCLSTDFSSQKGVKGLPLHVQIDTFEDPRDTAVFHRGYCQIKVFCDKGAERKTRDEERRAAKRKMTATGRKKLDELYHPVTDRSEFYGMQDFAKPPVLFSPAEDMEKVGQLGIGAATGMTFNPLSNGNSNSNSHSSLQSFYGHETDSPDLKGASPFLLHGQKVATPTLKFHNHFPPDMQTDKKDHILDQNMLTSTPLTDFGPPMKRGRMTPPTSERVMLYVRQENEEVYTPLHVVPPTTIGLLNAIENKYKISTTSINNIYRTNKKGITAKIDDDMISFYCNEDIFLLEVQQIEDDLYDVTLTELPNQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00479938;
90% Identity
iTF_00592157;
80% Identity
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