Dmac004497.1
Basic Information
- Insect
- Drosophila maculinotata
- Gene Symbol
- su(Hw)
- Assembly
- GCA_035045305.1
- Location
- JAWNPD010000335.1:3848056-3851102[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00067 0.045 14.3 2.2 1 20 211 230 211 232 0.94 2 12 2.8e-06 0.00019 21.8 0.4 3 23 283 304 281 304 0.93 3 12 0.013 0.9 10.2 0.1 1 23 310 332 310 332 0.96 4 12 7.5e-07 5.1e-05 23.6 2.5 1 21 339 359 339 360 0.95 5 12 3.2e-06 0.00022 21.6 0.6 2 23 372 393 371 393 0.96 6 12 0.0001 0.0071 16.8 5.3 1 23 404 426 404 426 0.99 7 12 8.1e-05 0.0055 17.2 0.9 1 23 432 454 432 454 0.97 8 12 1.6e-05 0.0011 19.4 0.8 1 23 460 482 460 482 0.99 9 12 2e-06 0.00014 22.2 3.1 1 23 488 510 488 510 0.98 10 12 7.2e-05 0.0049 17.3 1.4 1 23 514 536 514 536 0.97 11 12 0.00024 0.017 15.7 0.1 1 22 544 565 544 568 0.90 12 12 5e-05 0.0034 17.8 0.3 3 23 588 609 586 609 0.96
Sequence Information
- Coding Sequence
- ATGAGCGCCATTAAGGACGCCCCTCTCGCCCCGCCCACTGTCATCAAAATCTTGGACTTGGAGAAGCTCACCCCAGCCAAGGATAAGGACAAACGTTCTGGCACCCGCATGAAGCTGCTCAactcaacaacaaaagcatccCCCCGGGTCAAGCAGGAGAAGCGCCCCAGCATCAAAATACTCAACAACAGCGATGAATCCGGGAGCAGTCCCAAATCCACTGAAAGGCGCTCAGCCGTGAAAAGTGCGAGTCCCGCCGTCAAGATATTGAATGAGAAGAGAGTTGCGCCCGCCTCTGGCGCCGTGGAGACGGCAAAGATAAGAACGTCGCCtggaaagaagaagaaaatggATCACTATGTGCTGCAGGCGATCAAGAGCGAGAACAGCAAAGCGGACAACACCACCAGCGTGGAGGATGAGGACGATGACGACACCATTGACTTCATACTCGCCGACGAGGACATCGAGCTAGGAGCGGCCAAGGAGAACGGCGATGAGTTTGTAGTGTCTGGCGTGGAGGAGGATgaagacgaagacgacgaggaggaggaagaagaTGAAGCCACGGTTGAGGGCAGTGCAAACCGCAACAGTGGAAACAACACAGACCTCAAGGAAATGGTGGAGCATGTGTGCGGCAAGTGCTACAAGACATTCCGACGTGTCAAGAGCTTGAAGAAGCATTTGGAATTCTGTCGCTATGACAGTGGCTATCATCTGCGCAAGGCGGATATGCTCAAGAATCTGGAAAAGATCGAGAAGGATGCAGTGGTCATGGAGAAGAAAGACATTTGCTTCTGCTGCAGTGAGAGCTACGATACTTTTCatCTGGGCCACATCAACTGCCCCGATTGCCCCAAGTCATTTAAGACACAGACCAGCTATGAGCGTCACATCTTCATCACTCACTCCGAGTTCAATGATTATCCCTGCTCCATATGCAATGCCAAACTGCGCAGCTCTGCTTTACTGATTCTCcacgagcagcagcatcaatcGCGTGGCAAGCCCTTCGCCTGCAAGATCTGTGGCAAGGACTTTACACGCTCGTACCACTTGAAGCGCCACCAGAAGTATTCGTCCTGCTCGGCCAACGAGAATGATACCATGAGCTGCAAGGTATGCGATCGTGTCTTCTATCGCCTCGACAATCTACGCGCTCATCTCAAACAACATCTGGGCACCCAGGTGGTGAAGAAGCCCGAATACATGTGTCATGTCTGCAAGAATTGCTTCTACAGTCTCTCCACACTCAACATACACATTCGCACTCACACGGGAGAGAAGCCCTTCGATTGCGATCTGTGCGACAAGAAGTTTTCCGCCTTGGTGGCTTTGAAGAAGCATCGACGTTATCATACGGGCGAGAAACCCTACACCTGCACTGTGTGCAGTCAATCGTTTGCTGTCAAGGAGGTGCTCAATCGCCACATGAAGCGGCACACGGGCGAACGTCCGCACAAGTGCACCGAGTGCGGCAAGAGCTTCATCCAGGCCACACAGCTGCGCACGCATTCCAAGACGCATCTGCGTCCCTACCCCTGCACCTTGTGCACCCAAAAGTTTAAAACAGAGAAACAACTCGAGCGCCACGTAAAGGACCACACGCGCCAGAAACGCCCCTCGTTCGCTTGCTTGGATTGTCCACGAAATTTCCGCACCAGCGCCCTGCTTAAGGAACATATTGACTCTGGCGATCATTCGCCTGTTAAACCCACACGAGCCAAGCGCTCGGCTAGGATGATTGAGCGCACAGATTGCGCCATCTGCGACAAGAACTTTGATAGCACTGAAACTCTAAGAAACCACATACGCAGCGTGCATGAGTGCGATCCAGATGACATCTTTGGCACGGAACCACCTTCCGCAAAGCGTAGAGCTAAGAGGACCGTGCAGGTGGTGGAGCATAGTGaaaaggaggaggaggacgaggaAGACGAACCGGCTGCCAACACGTCAGCAGGCTCACTCATCTCCAGCAAAACGGACGGCAATGGGGTTGTGGTGCGCGAATTTCTGGTGGATGAGGGCGACGGTAATGCACAGACTATTGTCCTCGAGAACGAAGTGTACACCATTTTGCCTTTGGAGGGTGCCAGCGCAACCGAGGTGTCAGCAGAGAGCGAAGTTAAGGCAGAGTCTAaggagaagcagcagcagccggcggTATCGCCGGTGGTCAAGAAGGAGCAGCGCAAATCATTGGCCGCCAGCTTGGCCGCTGCCATTGCAGATAATCAGGAGGAGCCGTTGAGCGATGAAGATTTCAGTGGTGAAGTGCTCACTGAGGAGGATATCAAGCTGAAGGAGAACATAGCCAAGCTAATAGACATGCTTGTGGATCCGCAAACACTCAAGAAATACGGCTGGCCCAACAGCTCCGAAGAGTCGGTGCTGTGCAAGGTCATCGAGAACTGTGGCCACGATCTGGACAAGGGCGGTGAAAACTACGCCGAATTGGACTATGGCAGCCGAATGCGCGAGTATTGCAAGCTCCTGTTCACGGTGGTCATTCACAATGATTCCATTAAGGCGTTGCTGAATAATTTTCCGATCGACGATGTCATTGAGTATGTGCTTGGTGATGAGGATCAGGATCAGGACCATGACATGGAAAAGGGCAAAGACAAGGAGGCAGAGAAATCAGACACGGACACTAGGCTGGATGGCGTTGAAGCTGACGCTTAA
- Protein Sequence
- MSAIKDAPLAPPTVIKILDLEKLTPAKDKDKRSGTRMKLLNSTTKASPRVKQEKRPSIKILNNSDESGSSPKSTERRSAVKSASPAVKILNEKRVAPASGAVETAKIRTSPGKKKKMDHYVLQAIKSENSKADNTTSVEDEDDDDTIDFILADEDIELGAAKENGDEFVVSGVEEDEDEDDEEEEEDEATVEGSANRNSGNNTDLKEMVEHVCGKCYKTFRRVKSLKKHLEFCRYDSGYHLRKADMLKNLEKIEKDAVVMEKKDICFCCSESYDTFHLGHINCPDCPKSFKTQTSYERHIFITHSEFNDYPCSICNAKLRSSALLILHEQQHQSRGKPFACKICGKDFTRSYHLKRHQKYSSCSANENDTMSCKVCDRVFYRLDNLRAHLKQHLGTQVVKKPEYMCHVCKNCFYSLSTLNIHIRTHTGEKPFDCDLCDKKFSALVALKKHRRYHTGEKPYTCTVCSQSFAVKEVLNRHMKRHTGERPHKCTECGKSFIQATQLRTHSKTHLRPYPCTLCTQKFKTEKQLERHVKDHTRQKRPSFACLDCPRNFRTSALLKEHIDSGDHSPVKPTRAKRSARMIERTDCAICDKNFDSTETLRNHIRSVHECDPDDIFGTEPPSAKRRAKRTVQVVEHSEKEEEDEEDEPAANTSAGSLISSKTDGNGVVVREFLVDEGDGNAQTIVLENEVYTILPLEGASATEVSAESEVKAESKEKQQQPAVSPVVKKEQRKSLAASLAAAIADNQEEPLSDEDFSGEVLTEEDIKLKENIAKLIDMLVDPQTLKKYGWPNSSEESVLCKVIENCGHDLDKGGENYAELDYGSRMREYCKLLFTVVIHNDSIKALLNNFPIDDVIEYVLGDEDQDQDHDMEKGKDKEAEKSDTDTRLDGVEADA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01325058;
- 90% Identity
- -
- 80% Identity
- -