Dmac004734.1
Basic Information
- Insect
- Drosophila macrospina
- Gene Symbol
- L
- Assembly
- GCA_035042075.1
- Location
- JAWNLW010000284.1:4828351-4837943[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.1e-05 0.00071 19.8 2.9 1 23 187 209 187 209 0.98 2 17 0.38 24 5.5 6.2 1 23 215 237 215 237 0.97 3 17 1.8e-07 1.2e-05 25.4 3.2 1 23 243 265 243 265 0.99 4 17 1.3e-05 0.00087 19.6 0.4 1 23 271 293 271 293 0.99 5 17 0.029 1.9 9.1 0.3 2 23 368 392 367 392 0.91 6 17 0.0023 0.15 12.5 0.2 2 23 421 443 420 443 0.95 7 17 0.029 1.9 9.0 0.7 1 23 544 566 544 566 0.97 8 17 0.0012 0.078 13.4 0.1 2 23 574 595 573 595 0.91 9 17 6.5e-05 0.0042 17.4 0.2 1 23 603 628 603 628 0.93 10 17 4.6 3e+02 2.1 1.5 2 23 664 686 663 686 0.94 11 17 0.0027 0.18 12.3 1.1 1 23 736 759 736 759 0.97 12 17 0.0017 0.11 12.9 1.8 2 23 935 957 934 957 0.96 13 17 0.12 8 7.1 0.1 1 23 963 985 963 985 0.92 14 17 1.2 76 4.0 1.8 2 23 993 1014 992 1014 0.95 15 17 0.79 52 4.5 0.5 2 23 1116 1137 1116 1137 0.94 16 17 0.039 2.5 8.7 0.0 1 23 1147 1169 1147 1169 0.96 17 17 0.00024 0.015 15.6 1.2 1 23 1174 1196 1174 1196 0.97
Sequence Information
- Coding Sequence
- ATGATGGCTTTAAAGATGTTGTATCGCGGTCCCAGTTCGCGTTTGGAGAACTTAATTGAAAAGATTCAAGCCACAAAGGAGATTACGAATAACGATATGTACAGCACGCACACCTCCTCCAGCTACTCGCCGAGCATCTCGGACGGCACACTGACGCCCAACTCAcagcatccgcatccacaGCACGCCGCCTCGGGCGAGGATCCTGGCGTCGAGCACGGCAAGTTGAATGGTAGCACGGCTAGTGCTGCTGAGCAGGagcgtgagcgagagcgagagcgagatcgaGATAGGGAGAGGGAACCACTCAAGCTGAAGCGACCCGCCCAtttgcatcatcatcatcatcattatcatcatcagcaagcGCTGAAAATTGCCAACAAGTTGCGCAAAATCAATAAGGAAGCAAAGCTCACAGGACCCACAGGAGGTAATGGCATTGGCATAGCTGGAGCAGCATCAGGAGGTGGCCCAGGCGGTGGCGGGGGGCATGGGGCAGCCACAAAGTTTGATAAGTTGACAGGCGACGGCATTAAGAGCCGAGGCGACGGCTCCTATCAGTGTCAGTTCTGTGATAAATCATTTCCGCGGCTCGGTTACTTGAAGCATCACGTCCAGAGCCATGCCGAACATTTGCCTTTCAAATGCGAATACTGCGCCAAGTTATTCAAGCACAAACGCTCCCGAGATCGCCATAAGAAGCTGCACACCAACGAGCGCAACTACAAGTGTCCACATTGCGAGGCTGCATTCTCCCGAAGCGATCATCTGAAGATCCACATGAAGACGCACGACATCCAGAAGCCCTTCCAGTGCAGCATGTGCAATCGGGGCTACAACACGGCCGCCGCCTTGACCTCGCACATGCAGAAGCATAAGAAGAATGCGGCAATACTGGCAGCTGGTGGCAATCCTAATGCCCTCAACTATAGTCCACGTAGCACCGGCTCCGCCTCCATCTCCAGCAATGGGAGTCTGCACAAGCGACGCTATGCATTGGCGCTGGCCTCCGACAGCAGTCCGAGTCGGCTGGAGTATCCGAAGCGTGGACGTGGCCATGTGGCAACCACGCCCACACCGACACCCACGCCCTTGCTGCGCTGCAGCTACTGTCCCAAGGCGACGGAGTTCAGCAGCCTGGAGCAATTGAATGCACATCTGCAGCAGACGCACGAGCAGCAGGCGAGGATGGCGACGAGCACGACAACAACGCCGCCCGGCGGAGATGGGGAGACGCAGCCGAATGGCTTCCAGCTGAGCTGCGAGTACTGCACCATGAGATTTGGTAATATTGCAGCACTGTTCCAGCATATGCGGGCGACGCACTTGGATCGCTTGAGCAGTCCCAACTCCTACTATGAGCACTTCAATCGCCTGGCCACGGCTGGCACATTCAGTCCGCGCTTGGCGCTGGAGCTGCCCAAGATTAAGCAGGACATGGGCAGTCCACAGCGGGAGCAGCTGATGGAGAAGCCGGAGCAGGAGCTGCCCACCGATCTGAGCAGCAATAAGCGACGCACAGTGACACCACAATTAacgccaccagcagcagcaccaccaccaccagcagcagcagcaccccaagcaccaccagcaccccAAGCGCCACAAGCGCCACCTGGCGTCTTCTTTTGCAATCAATGCAATGCTGGACTCCCCGACTTCGAGAGCTTCCGCAACCATCTGAAGACCCACATTGCCGAGGGCATGCAGCTCATCTGTCCACACTGTGGCCTCAGTCTGCCCGACCAGAGCGACTACGAGCGCCATGTGGTTGCCCACTTTCTGATCACGAGCAGCGAGTTCAATTGCAGTGCCGCCAGCTGTGGCAAGTCCTTTGCCAAGTCCGACGAACTGCAGCAGCATCTGAACAGCGAGCATGTGATCACCCTGCTGAAGTGTGCCCTCTGCTCGGAGCTCTGCGAGTCCAGAATGGCCATGCAGCTGCACTTGGCCTGTGCGCACAGCCAGGAGACAAAGCTGTTGCGTTGCAGCGCCTGCATGGAGATCTTTCGCAATGATACGGACTTCCATGTGCATGTGAAGACGAGGCATCCGCTCGCTGGGCATCAAGGAACGGCTGGAGgatcggctgctgctgctgctgttgcgccaGCTAATCCCTTGCAGTGCATGTTCTGTCGCGCTGTGTGCTCCTCGGAGCTGgaaatgcatttccatttggcGGCACATGCGCGACAATTCCGTTGCCCCTCCTGCCCCGAGACGTTCCACGTCGAGTTCCTGCTGGACCGGCACATGCAGAGCCAGCATGGCGGCGGTGTCAAGGAGCCAACGGCAAAGGAGCCCAGCAGCTCACCCAACATGGGCAGCCTCTATGTGAATGCGTTGCTGCCACCGCTTGCcgcagctgcggcagctgccgccgtggcaaccaacaacaacagcagcctgCACATTGACTACAATGTGGCATTCAAGGGACTCTTTGGCGGAGCAGGCGcaggtggtggtgttggtggtgccaCGCCCGGTGGCAAGTTCTACAGCCCGCTGCAGGTGGACACCAGCGGATTGAAGCCACAACAGTCGCCACACCCGGCTCTCATGTACGGTCTGAGCCAACGCTATCTGATGGAGATGTATGCCGCCAAGGCAACGTCTCCGGCGGCGGCTAGTGCGCCGGATGTGCCTGTCCAGCAGTCGGCAGGCGCCACAGCGTCCAGTGCcggcagcagctacagctgtGGCATGTGTGAGCGCCAGGATCTGCGCAGCGAGGCGGAGCTGCACTCACATCGCAAGTTGGCCCACAATCTGAAGACGGGCGTCAGCTTGAGGTGCGCCTACTGTTCGGGCAACTTCAAGTCGCGGGCCGAGCTGGAGCAGCACATGAAGAGTTGCCACAACTCGAGTGGCAAGCACAAGTGTCTCATTTGCGATGAGATCTTCCCATCGCCCGCTATACTCGCCGAGCACAAGCTGCAGCACTCCAAGGTGGGGCAGTCGGGCAAGTGCGCCCACTGTGGCCACCAGCTGGAGCATGTGGCCGCCTTTCGCGCCCATCTCACCGAGCATGGCAGCGATGGTAATCTGCCCATGGCCTGCATCTGCTGCCGCCAAACGCTTCACTCCGAGTTCGAGCTCAGCCTTCATGCCAAGTTCCACACGAAGTCACCCAGCGGCGGTGGCAGCCTCCAGGAGCCGGTCTGCGCCCTCTGCCTGGAGCCACTGCCGGGCGCCGGCGACACGGCCAAGCTGTGTGAGAAATGTTGCCGCAAGCACAATCTCAATGGCAAGCGTGGTGGCAACAAGGAGCAGTCGACGCCACTGGGGGCAACGGGAGCGCCAGGGAACACTGCGGCCAGCTACATGGAGAATCGTTGCAATCTCTGCAAGATGATACTACCGCATGCCCAGAAACTGCAGGAGCATCTCGTGGAGCACACGTTCGCCGGCACCGAACAGCGTGGCTTCAATTGCTACATTTGCTCCGCCGTCTTCACCGCCCCCGCCGGTCTGTTGAGTCACATTGCGGAGCACGGTGCTCGCCCCTACGACTGCAATCTGTGCCCCGAGAAGTTCTATTTTCGCGCCGAACTGGAGCATCATCAGCGTGCCCATGAGCTGCGACCAGCACCGCTGCCAGCTGCACGTGTCGCCAAGCAGGAGACACGCCGCTCATCCGTAAGCTCACCCATTGCATTGAGTCCCTGCCAGGTGAAGCAGGAACTGTATGAATCAGAGACGGCTACGTCacccgccgccaccgccgccgcagcCGATGAGTCGTTAGCCCAAGACGAGGAGGAGTACATTGAAGTGGAGCAGGTGCCGCATGAGAGCCGCTCCGGAGAGCTGCTGACCTCCGCACACACCGAAcgctccagcagcagcgcctAG
- Protein Sequence
- MMALKMLYRGPSSRLENLIEKIQATKEITNNDMYSTHTSSSYSPSISDGTLTPNSQHPHPQHAASGEDPGVEHGKLNGSTASAAEQERERERERDRDREREPLKLKRPAHLHHHHHHYHHQQALKIANKLRKINKEAKLTGPTGGNGIGIAGAASGGGPGGGGGHGAATKFDKLTGDGIKSRGDGSYQCQFCDKSFPRLGYLKHHVQSHAEHLPFKCEYCAKLFKHKRSRDRHKKLHTNERNYKCPHCEAAFSRSDHLKIHMKTHDIQKPFQCSMCNRGYNTAAALTSHMQKHKKNAAILAAGGNPNALNYSPRSTGSASISSNGSLHKRRYALALASDSSPSRLEYPKRGRGHVATTPTPTPTPLLRCSYCPKATEFSSLEQLNAHLQQTHEQQARMATSTTTTPPGGDGETQPNGFQLSCEYCTMRFGNIAALFQHMRATHLDRLSSPNSYYEHFNRLATAGTFSPRLALELPKIKQDMGSPQREQLMEKPEQELPTDLSSNKRRTVTPQLTPPAAAPPPPAAAAPQAPPAPQAPQAPPGVFFCNQCNAGLPDFESFRNHLKTHIAEGMQLICPHCGLSLPDQSDYERHVVAHFLITSSEFNCSAASCGKSFAKSDELQQHLNSEHVITLLKCALCSELCESRMAMQLHLACAHSQETKLLRCSACMEIFRNDTDFHVHVKTRHPLAGHQGTAGGSAAAAAVAPANPLQCMFCRAVCSSELEMHFHLAAHARQFRCPSCPETFHVEFLLDRHMQSQHGGGVKEPTAKEPSSSPNMGSLYVNALLPPLAAAAAAAAVATNNNSSLHIDYNVAFKGLFGGAGAGGGVGGATPGGKFYSPLQVDTSGLKPQQSPHPALMYGLSQRYLMEMYAAKATSPAAASAPDVPVQQSAGATASSAGSSYSCGMCERQDLRSEAELHSHRKLAHNLKTGVSLRCAYCSGNFKSRAELEQHMKSCHNSSGKHKCLICDEIFPSPAILAEHKLQHSKVGQSGKCAHCGHQLEHVAAFRAHLTEHGSDGNLPMACICCRQTLHSEFELSLHAKFHTKSPSGGGSLQEPVCALCLEPLPGAGDTAKLCEKCCRKHNLNGKRGGNKEQSTPLGATGAPGNTAASYMENRCNLCKMILPHAQKLQEHLVEHTFAGTEQRGFNCYICSAVFTAPAGLLSHIAEHGARPYDCNLCPEKFYFRAELEHHQRAHELRPAPLPAARVAKQETRRSSVSSPIALSPCQVKQELYESETATSPAATAAAADESLAQDEEEYIEVEQVPHESRSGELLTSAHTERSSSSA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00507081;
- 90% Identity
- -
- 80% Identity
- -