Basic Information

Insect: Drosophila lutescens
Gene Symbol: SCRT1
Assembly: GCA_037075285.1
Location: JBAMCF010000469.1:113799-116892[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 2.3e-07 1.8e-05 25.2 1.5 1 23 464 486 464 486 0.99

2 5 0.00035 0.028 15.1 0.4 2 23 496 517 495 517 0.98

3 5 1.5e-05 0.0012 19.4 0.4 1 23 521 543 521 543 0.97

4 5 5.1e-08 4.1e-06 27.2 0.6 3 23 551 571 549 571 0.98

5 5 7.3e-05 0.0059 17.3 2.2 1 21 577 597 577 598 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	2.3e-07	1.8e-05	25.2	1.5	1	23	464	486	464	486	0.99
2	5	0.00035	0.028	15.1	0.4	2	23	496	517	495	517	0.98
3	5	1.5e-05	0.0012	19.4	0.4	1	23	521	543	521	543	0.97
4	5	5.1e-08	4.1e-06	27.2	0.6	3	23	551	571	549	571	0.98
5	5	7.3e-05	0.0059	17.3	2.2	1	21	577	597	577	598	0.94

Sequence Information

Coding Sequence: ATGCCGCGCTGCCTGATAGCCAAGAAGTGGAAGGCCTATCCCTGGTTGGATCGGTCGGAGGATAACAAcaaccagcaacagcagcaaccgaGCTCCTCCAGAGATCTGGAGGAACTGCATCTCAAGTCTAGAAGATCTACTTTGGATGAAGATGAGGAGATTGACGTGGTGGGCGATAAATTCCTGATTAAGATGGAAAAGCAACGCACAACggcagatgcagcagcagcaacggcagcaacatcctCGGAAGCAGCAACATCGCAAAGCAGCAACATGGAGgccacgacgacgacgacagccAAGTGCTGGGGTCCCAGTTCACCCACGGCGGGCACCACGGCTCCAAGTCCACCTCCTCACTCCCCGGAGGCGGCGACGCGAGTGGCCGGCAATGTTTACAACGGCTACACCCGCGAACTGTCGCCGCTGCACTACACCGCGTACCTGCCCCGCATGGAGAGCGAGATAACCGTGATCCGAGCGGCGGCCACGGCTCTGGTGGCAGCCAGAACCTCCACCgccaatggaaatggaagcAGTGGAGATCAGCACCTGGCCGCCTACCAAACACCGCCCTCGTCCACCACTTCATCACCCTCCTGCTCGCCCAGTGGCGCCAACGATCGCTACAGTCCATTGTCGAGTGGCCAGACCTCCAGCGAAAGGAAGTGCTTCAGCAGTACGGGGGCCACTCTCTCCCTGCCGCCGAAGAAGAAGGACATCTACAGGCCCTACTCACTGGACGACAAGCCGGCACATGGTTATCGGAGGAGGATTCCGGCGGAGGAGGACCTGCATGCGGCACATGCCATCCTGGATCTGAGTGCCAGCACAGCCTTCCACCCGCCCACGCAGCCTCATcagctacagcagcaacagcaacaacaacagcaacagcagcaacatcacctGGCcccgcagcaacatcaacattaCTTgccactgcagcagcagcagcaacagcagcaacaccacaACCACACCCACTTGCCAACCTTGGAGGCGCATGCGCATCTGCGCAGCAGTTCGATTGCCGAGCTGGCTGCAGCAGCAAGTGTGGTGAACGAGCAACGCCCCGCGAGCAATGCCTCGagtgccagcagcaacagcaatcaCATGCCCAGCAGTCCCAGCAGCAactcgagcagcagcagcaacggcagcagTCAGGTGCAGAACGAGAACAGCAACACCACCAACACGAACCAGGATGGCGAGTGCCTGCAGGATGCGGAGCATGGAGGCGCCTCTGGAGCCGCGGCCAAGACGGTGGCCTACACCTACGAGGCCTTCTTCGTCAGCGACGGTCGCTCCAAGCGCAAGCATGTGGCTGATCCGGCAGCAGCTTCTGCGGGAGTTCCTTCCCCCGATCAGGCCAAGACCAAGTACACCTGCTCCGAGTGCGGCAAGCAGTATGCCACCTCGAGTAACTTATCTCGCCACAAGCAAACGCATCGCTCGCTGGACTCGCAGTCGGCCAAGAAGTGCCACACCTGCGGCAAGGCCTATGTATCCATGCCTGCTTTGGCCATGCACCTGCTGACCCACAAGCTATCCCATAGTTGTGGCGTTTGTGGCAAGCTGTTCTCACGACCCTGGTTGCTCCAAGGACATCTGAGATCGCATACGGGCGAGAAACCCTATGGATGTGCGCACTGCGGCAAGGCCTTTGCAGATCGCTCGAATCTTCGGGCTCATATGCAAACCCATTCGGTGGACAAGAACTTCGAGTGCAAGCGATGCCACAAGACCTTCGCCTTGAAGTCGTATCTCAATAAGCACTTGGAGTCTGCCTGCCTgaaggacgaggaggagctgaTGATGTCCATGTCGCTGTCCATGCACGATAGCAACAGTGAGAGCGGGGCCAGCATGGCCTCGTCGCCGCCACACGAGTTCCTCGAACGCGTGAAGCTCGAGGGCAGTGGAGGAGCCACTTATGCCATGTAA
Protein Sequence: MPRCLIAKKWKAYPWLDRSEDNNNQQQQQPSSSRDLEELHLKSRRSTLDEDEEIDVVGDKFLIKMEKQRTTADAAAATAATSSEAATSQSSNMEATTTTTAKCWGPSSPTAGTTAPSPPPHSPEAATRVAGNVYNGYTRELSPLHYTAYLPRMESEITVIRAAATALVAARTSTANGNGSSGDQHLAAYQTPPSSTTSSPSCSPSGANDRYSPLSSGQTSSERKCFSSTGATLSLPPKKKDIYRPYSLDDKPAHGYRRRIPAEEDLHAAHAILDLSASTAFHPPTQPHQLQQQQQQQQQQQQHHLAPQQHQHYLPLQQQQQQQQHHNHTHLPTLEAHAHLRSSSIAELAAAASVVNEQRPASNASSASSNSNHMPSSPSSNSSSSSNGSSQVQNENSNTTNTNQDGECLQDAEHGGASGAAAKTVAYTYEAFFVSDGRSKRKHVADPAAASAGVPSPDQAKTKYTCSECGKQYATSSNLSRHKQTHRSLDSQSAKKCHTCGKAYVSMPALAMHLLTHKLSHSCGVCGKLFSRPWLLQGHLRSHTGEKPYGCAHCGKAFADRSNLRAHMQTHSVDKNFECKRCHKTFALKSYLNKHLESACLKDEEELMMSMSLSMHDSNSESGASMASSPPHEFLERVKLEGSGGATYAM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00543332;
90% Identity: iTF_00505604; iTF_00578761; iTF_00592587; iTF_00596847; iTF_00539856; iTF_00504889; iTF_00602827; iTF_00581746; iTF_00591898; iTF_00605056; iTF_00619349; iTF_00548278;
80% Identity: -