Basic Information

Insect: Drosophila erecta
Gene Symbol: SCRT1
Assembly: GCA_000005135.1
Location: CH954178.1:6686706-6689683[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 2.2e-07 1.5e-05 25.2 1.5 1 23 466 488 466 488 0.99

2 5 0.00034 0.024 15.1 0.4 2 23 498 519 497 519 0.98

3 5 1.5e-05 0.001 19.4 0.4 1 23 523 545 523 545 0.97

4 5 4.9e-08 3.5e-06 27.2 0.6 3 23 553 573 551 573 0.98

5 5 7e-05 0.0049 17.3 2.2 1 21 579 599 579 600 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	2.2e-07	1.5e-05	25.2	1.5	1	23	466	488	466	488	0.99
2	5	0.00034	0.024	15.1	0.4	2	23	498	519	497	519	0.98
3	5	1.5e-05	0.001	19.4	0.4	1	23	523	545	523	545	0.97
4	5	4.9e-08	3.5e-06	27.2	0.6	3	23	553	573	551	573	0.98
5	5	7e-05	0.0049	17.3	2.2	1	21	579	599	579	600	0.94

Sequence Information

Coding Sequence: ATGCCGCGCTGCCTGATAGCCAAGAAGTGGAAGGCCTATCCCTGGCTGGATCGCACCGAGGATGCTggcaaccagcagcagcaacagcagcagcagagtgCCCCCAACTCGCCTCGAGAGCTTGAGGAGCTGCATCTCAAGTCCAGACGCTCCACCCTGGACGACGATGAGGAGATCGATGTGGTGGGCGACAAATTCCTGATCAAGTTGGAGAAGCAACGCACAACAGCAGatgctgcagcggcagcagcagcagcagcagcagcaacatcatccgAGGCAGCAACGGAGGCATccacgacgacgacgacgacgacgtccAAGTGCTGGGGACCCAGTTCACCCACGGCGGGCACCACGGCTCCAAGTCCGCCTCCCCATTCGCCGGAGGCGGCGACGCGAGTGGCCGGCAATGTTTACAACGGCTACACTCGCGAACTGTCGCCGCTGCACTACACCGCGTACCTGCCCCGCATGGAGAGCGAGATAACCGTGATCCGTGCCGCGGCCACAGCTCTGGTGGCAGCCAGGACatccggaaacggaagtggagATCAGCACCTGGCCGCCTACCAGACGCCGCCCTCGTCCACCACGTCATCACCCTCTTGCTCGCCCAGCGGCGCCGGCGATCGGTACAGTCCGCTCTCGAGTGGACAGACCTCCAGCGAAAGGAAGTGCTTCAGCAGTACGGGTGCCACACTGTCGCTGCCGCCGAAGAAGAAGGACATCTACAGGCCGTACTCCCTGGACGACAAGCCGGCGCACGGCTATCGGAGAAGGGTTCCCGCGGAGGAGGACCTGCATGCGGCACATGCTATCCTGGATCTGAGTGCCAGCACAGCCTTCCACCCGCCCACGCAGCCTcaccagctgcagcagcagcagcagcatccgcagcaTCACCAttcccagcagcaacaccttGCCCCGCAGCAACATCACTACTtgccactgcagcagcaacagcaacagcagcaacagcagcaggcacACCACACCCACTTGCCAACTCTCGAGGCGCATGCGCATCTGCGCAGCACGTCATCGATTGCCGAGCTGGCTGCAGCGGCCAGTGTGGTAAATGAGCAACGCCCCGCCAGCAATGCCTCGAGTGCCAGCAGCAATCACATGCCCAGCAGTCCCAGCAGCaactcgagcagcagcagcagccaggtgCAGAACGAGAACAGCAACACCACGAACACGAACCAGGATGGGGATGGATGCCTTCAGGATGGGGAGCACAGTGGCGCCTCCGGTGCCTCGGCCAAAACGGTGGCATACACCTACGAGGCCTTCTTCGTCAGCGATGGCCGCTCGAAGCGCAAGCATGTGGCGGATCCCGCAGCTGCCGCCAGCGGAGTGCCCACTCCTGACCAGCAGAAGACCAAGTACACCTGCTCCGAGTGTGGCAAGCAGTATGCCACCTCCTCGAACCTGTCGCGCCACAAGCAAACCCATCGCTCGCTGGACTCGCAGTCCGCCAAGAAGTGCCACACCTGTGGCAAGGCCTACGTTTCCATGCCCGCCCTGGCGATGCACTTGCTCACGCACAAGCTCTCGCACAGCTGCGGCGTTTGTGGCAAGCTCTTCTCGAGGCCCTGGCTGCTCCAGGGTCACCTGAGATCCCACACGGGCGAGAAGCCCTATGGATGTGCGCACTGCGGCAAGGCGTTTGCCGATCGTTCCAATCTTCGAGCACACATGCAGACCCATTCGGTGGACAAGAACTTCGAGTGCAAGCGGTGCCACAAGACCTTCGCCCTGAAGTCATACCTCAACAAGCACTTGGAGTCGGCTTGCCTgaaggacgaggaggagctgaTGATGTCCATGTCGCTGTCGATGCACGACAGCAACAGCGAGAGTGGGGCCAGTATGGCCTCGTCGCCGCCACACGAGTTCCTTGAGCGCGTCAAGCTCGAGGGCAGTGGAGGAGCCACTTATGCCATGTAA
Protein Sequence: MPRCLIAKKWKAYPWLDRTEDAGNQQQQQQQQSAPNSPRELEELHLKSRRSTLDDDEEIDVVGDKFLIKLEKQRTTADAAAAAAAAAAATSSEAATEASTTTTTTTSKCWGPSSPTAGTTAPSPPPHSPEAATRVAGNVYNGYTRELSPLHYTAYLPRMESEITVIRAAATALVAARTSGNGSGDQHLAAYQTPPSSTTSSPSCSPSGAGDRYSPLSSGQTSSERKCFSSTGATLSLPPKKKDIYRPYSLDDKPAHGYRRRVPAEEDLHAAHAILDLSASTAFHPPTQPHQLQQQQQHPQHHHSQQQHLAPQQHHYLPLQQQQQQQQQQQAHHTHLPTLEAHAHLRSTSSIAELAAAASVVNEQRPASNASSASSNHMPSSPSSNSSSSSSQVQNENSNTTNTNQDGDGCLQDGEHSGASGASAKTVAYTYEAFFVSDGRSKRKHVADPAAAASGVPTPDQQKTKYTCSECGKQYATSSNLSRHKQTHRSLDSQSAKKCHTCGKAYVSMPALAMHLLTHKLSHSCGVCGKLFSRPWLLQGHLRSHTGEKPYGCAHCGKAFADRSNLRAHMQTHSVDKNFECKRCHKTFALKSYLNKHLESACLKDEEELMMSMSLSMHDSNSESGASMASSPPHEFLERVKLEGSGGATYAM*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00543332;
90% Identity: iTF_00536987;
80% Identity: -