Basic Information

Insect: Drosophila lutescens
Gene Symbol: salm
Assembly: GCA_037075285.1
Location: JBAMCF010000300.1:1186712-1195271[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 2.3e-06 0.00019 22.0 1.7 1 23 323 345 323 345 0.98

2 8 3.7e-06 0.0003 21.4 1.1 1 23 351 373 351 373 0.98

3 8 2.3 1.8e+02 3.1 2.5 5 23 601 619 598 619 0.84

4 8 3.4e-08 2.8e-06 27.8 0.2 1 23 625 647 625 647 0.98

5 8 0.001 0.083 13.7 0.9 1 23 657 679 657 679 0.98

6 8 0.052 4.2 8.3 0.1 2 23 894 916 894 916 0.96

7 8 1.1e-05 0.0009 19.8 5.0 1 23 1055 1077 1055 1077 0.96

8 8 8.9e-08 7.1e-06 26.5 0.7 1 23 1083 1105 1083 1105 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	2.3e-06	0.00019	22.0	1.7	1	23	323	345	323	345	0.98
2	8	3.7e-06	0.0003	21.4	1.1	1	23	351	373	351	373	0.98
3	8	2.3	1.8e+02	3.1	2.5	5	23	601	619	598	619	0.84
4	8	3.4e-08	2.8e-06	27.8	0.2	1	23	625	647	625	647	0.98
5	8	0.001	0.083	13.7	0.9	1	23	657	679	657	679	0.98
6	8	0.052	4.2	8.3	0.1	2	23	894	916	894	916	0.96
7	8	1.1e-05	0.0009	19.8	5.0	1	23	1055	1077	1055	1077	0.96
8	8	8.9e-08	7.1e-06	26.5	0.7	1	23	1083	1105	1083	1105	0.98

Sequence Information

Coding Sequence: ATGTGTTCAATATTTCGCAACCGCATCAATTACCGTGGAACCGGCGGCACCAGGAGCGGCAGCGGAGAGCGGGAGAGGGACCGCGACCGGGATCGGGACAGAGATCGGGATCGGGAAATAGGTAATAGGGACGCCCTGCTGGCCAAGGAACTGGATGCGgatagcaacaacaatggagcGGAGGCACTTCCGGAATCCGATACGGAacgggaaatggaaatggccgAGGATCGGGATCAGGAGCAGGATcaggaggagctggagaacAGCAACGAGGCCCTCGACCTCTCGCTGATCTCGTCCAGCGGCCGGGAATCGCTGCCGGGCAGTGGTCACGTCTCGCTGGAGGCCCTACAACATACCAAAGTGGCGGTGGCCCAGTTCGCCGCCTCGGCGATGGCCGGCAATCATCAGACCGCCGATCTGGCCATGGTGCAGTCCACCATCTTCAATGTGCAGCGGCAGCATCTGATGCAGCTGCAGCTCATCCAGCACCTGCAGAGTCAATTGAAAAGGGCCGAGGCAGCCGCCCTGGGCAGGCCATCTCACagcgatgaggaggaggacgagccGGAGCCGGAGCCGGAGCCCAAGAAGCAGCCAGCCAATGGCCtcaaggaggaggatgaggaggatcaggaggagcaggagcaggatcaCGAGGAGGAGCCGCGGCGGGAGGAGAGTTCAAAGACTGACAAGAGGGCGACTGAGGAGAGGAAGACGGAGCCGGAGGGCTACCAACCCAACATGATGTGCGACATCAGCTCGAGCCTGGCCTCGACCATCATCACCAACCACGATCCCCCGCCGGCTCCCAACGAGCCCAACTGCCTGGAGATGCTGCAGCGGCGCACGGAGGAGGTCCTGGACTCCGCCTCCCAGAGCCTGCACGCCGCCCAGATGCAGGAGGAGTACTCGGAGTACGCCTCCAAGGAGGCCCAGAGTCGCGGTGAGATCTTCAAGCACCGCTGCAAGTACTGCGGCAAGATCTTCGGCAGCTACTCGGCCCTGCAGATTCACCTGAGATCCCACACCGGCGAGCGTCCGTTCGTTTGCAATGTCTGCGGCAGTAAGTTCACCACGAAAGGCAATCTCAAGGTTCACTACCAGCGGCACACGCAGATCTTTCCACCCATGCTCCTGCCACCGGGtgtggcgcccaacgtggggcattCGGGTCAGGGTCAAGGGGCGCAGGCCGAGCAGTATCCCATTCGGCTGCCTTTTGTGCCCCCAGCGGCACCAGGGGGTCAGGAGCAGGTTCCGCAGCTGCAAGTGGAGGAGCCGGAGGAAGTGGGCAGCAGGCAGGAggttccgattccgattccgattcccgtTCAGCAGGCCGAAGATCTCAGCAAGCCAGTGGCGCGGGAGAAGGAAAAGTCCCACTCTCCCGTGGAGCATGTCAAGACCCCCAAAGAGGTGAAGCCAGAGGTTCAACAAGCGTTGTCGCCCCCGGAGAAGCCCGAAAAGGAGGTCTCCAAGCCACCGGCGGTGAACGCTTCGCGACGAAATGGCTCTGTCCGCAAGCGCCAGACCAGCAGTGCTGGGAGTCCTCCTCAAGAGGACAGGGAACGGGATCTCGCCGAGCATTTGCATATAGCCAAGCTGGTGAGACGCTCATCCGCGAGCAGAGACTCCCAGCCGGCCGAGTACTCGCTGGCCCAAATGGAGCGCATCATCGACAAGTCGTGGGAGGATCTGATCGAGATCGACAAGACGTCGGAGACCTCaaagctgcagcagctggtGGACAACATCGAGAACAAGCTGACCGATCCGAACCAGTGCATCTTCTGCCAGAAGGTCATGTCCTGCCGCAGCTCCCTGCAGATGCACATCCGGACGCACACCGGCGAGCGCCCGTTTCGCTGCAAGATCTGCGGCCGGGCCTTCGCCACGAAGGGCAACCTGAAGGCCCACATGAGCATACACAAGATCAAGCCGCCGATGAGGAGCCAGTTCAAGTGTCCCGTGTGCCACCAGAAGTTCTCCAACGGCATCATCCTGCAGCAGCACATTCGCATCCACACCATGGACGATGGCAGCGGTGGCCAGGCTGGTGGTCCTGGCACAAATCCCGGCGAGGCCGAGCGGTTGGGTATCGAGGATCAGAACTCCAACAAGTCGCTGGGCACCTCGGACACCCTGGACTTCTCCACCACCATTTCGGATCACTCGGGTCAGCGGTCGGAGTCCTCGCAGGGCGGCGATTTCGATGAGTTCATGACCATGGACAGCACGGATGACTCCAGGGACAACTCCAGTGCGGCCACAGCCACGCCCCATCCGCTGGAGAgcagggagagggagagggaaagGGACAGGGAGAAGGAACGGGAAAGGGAGCGTAGGATTGCAAACGATGGCTCCGACGAGAGATCTCACTCCAATCCCGATCTGGCCGGAGGACGCAGCGAGAGTGGGGAGATGCCCGCCATGGATCTCTCCTCGCCCTCCTCGGCCACCGGTCGCATCTTCGGAACCGGACTGGCGAATGGAGGATCGGGCAGTGGTGGTCTCCCCGGGATGCTCGGGATGCCCATGCCCCCGAATCTCCTGCTCATGGCAGCTGCCCGCGAAGAAATGCACGCTCTAGGTCACGCTCACGCCAAATTTCCCCTGCTGCCCTTCGGTCCTCTTGGATTTATGGGTCTGCACCCGCCCCCCAATGTGTGCAATCTCTGCTTCAAGATGCTGCCCAGCCTGGCCGCCCTGGAGAGCCATCTGCAGAGCGAACATGCCAAAGAACCGGCGACGGGCCACGCCCTCCGCCCCCACAGCAGTGACGCCGGATCGCCGTACGGTGCCAAGCTCACTCTCAATCCAAATCTGTTTGCAAAGAAGCCGCCTTCGGGTGACAAGTTGCCGGAGGCATCGGCCCTGCCCTTCGCCCCCGAAAATCCCCCAGCGACGCCCATCAAAGAGGATCCCGATCAGGAGCAGTTGATGGTGGAGGAGGCTGGCTCGGCTGGCGAAGGATCTGGCAATGGAGCTGGATCGAATTATCCCCCGGATGCCGGCGATGCAGAGCAGTCGCTGATGAAGATGCAGCTCCATGCCCATCGCTTCCCTGCCAGTCCCCTCGACTTTCAGCAGGCACTGATGTCCGCAGGACCTCCGACCTCCAGTCTGGATCCTCCGGTGAACAACAAGCACTTTTGCCACGTCTGCCGCAGGAACTTCAGCTCGAGTTCCGCTCTCCAGATCCACATGCGCACCCACACGGGCGACAAGCCCTTCCAGTGCAATGTGTGCCAGAAGGCCTTCACCACCAAGGGGAATCTCAAGGTGCATATGGGCACTCACATGTGGACGAATCCGACTTCGCGGCGAGGTCGCCGAATGTCCTTGGAGCTACCCATGCGTCCTGGTCCGAACTCGGGCCAAAATCATCCAGGACCGACTGCCGAACAGGAGTTTATGCAGCGAAGACCGGAGCTCTTTTTTCCCTACCTGCCGCCTTTTTTTAACGGACTGCCACCAAAGCCTGGTGAACTGAGTCCCGGCGCCTTTCCCAATATTCCCCCGCCGCCCTTCGCCAACGGCGGCAAGTTTCCCTATCCGCCCGGACTCCTGGGATTCCCGGGCTTCCTGGCCCAGCATCCCTATGGCCTAGAGCGGCGGAGCAGCAGCAAGTCCCCCACACCGGAGCCGGCTCAGAGTCCCTCGTTGCGGGAGGACGAGGGTTCCGGCAATATATGGCATCCACTGAGTCGCATCAAGGTGGAGAGCAATCAAAGCGAGGCCGGCGGCGGCTTCAGCGAGCAGGAGGATCAGCAGGAGGCAGAGACGGAGGCCACCGGAGGAGGGGACAACGAGGAGTCGGAGTCCAGAGATGCGGAGAAGTAA
Protein Sequence: MCSIFRNRINYRGTGGTRSGSGERERDRDRDRDRDRDREIGNRDALLAKELDADSNNNGAEALPESDTEREMEMAEDRDQEQDQEELENSNEALDLSLISSSGRESLPGSGHVSLEALQHTKVAVAQFAASAMAGNHQTADLAMVQSTIFNVQRQHLMQLQLIQHLQSQLKRAEAAALGRPSHSDEEEDEPEPEPEPKKQPANGLKEEDEEDQEEQEQDHEEEPRREESSKTDKRATEERKTEPEGYQPNMMCDISSSLASTIITNHDPPPAPNEPNCLEMLQRRTEEVLDSASQSLHAAQMQEEYSEYASKEAQSRGEIFKHRCKYCGKIFGSYSALQIHLRSHTGERPFVCNVCGSKFTTKGNLKVHYQRHTQIFPPMLLPPGVAPNVGHSGQGQGAQAEQYPIRLPFVPPAAPGGQEQVPQLQVEEPEEVGSRQEVPIPIPIPVQQAEDLSKPVAREKEKSHSPVEHVKTPKEVKPEVQQALSPPEKPEKEVSKPPAVNASRRNGSVRKRQTSSAGSPPQEDRERDLAEHLHIAKLVRRSSASRDSQPAEYSLAQMERIIDKSWEDLIEIDKTSETSKLQQLVDNIENKLTDPNQCIFCQKVMSCRSSLQMHIRTHTGERPFRCKICGRAFATKGNLKAHMSIHKIKPPMRSQFKCPVCHQKFSNGIILQQHIRIHTMDDGSGGQAGGPGTNPGEAERLGIEDQNSNKSLGTSDTLDFSTTISDHSGQRSESSQGGDFDEFMTMDSTDDSRDNSSAATATPHPLESRERERERDREKERERERRIANDGSDERSHSNPDLAGGRSESGEMPAMDLSSPSSATGRIFGTGLANGGSGSGGLPGMLGMPMPPNLLLMAAAREEMHALGHAHAKFPLLPFGPLGFMGLHPPPNVCNLCFKMLPSLAALESHLQSEHAKEPATGHALRPHSSDAGSPYGAKLTLNPNLFAKKPPSGDKLPEASALPFAPENPPATPIKEDPDQEQLMVEEAGSAGEGSGNGAGSNYPPDAGDAEQSLMKMQLHAHRFPASPLDFQQALMSAGPPTSSLDPPVNNKHFCHVCRRNFSSSSALQIHMRTHTGDKPFQCNVCQKAFTTKGNLKVHMGTHMWTNPTSRRGRRMSLELPMRPGPNSGQNHPGPTAEQEFMQRRPELFFPYLPPFFNGLPPKPGELSPGAFPNIPPPPFANGGKFPYPPGLLGFPGFLAQHPYGLERRSSSKSPTPEPAQSPSLREDEGSGNIWHPLSRIKVESNQSEAGGGFSEQEDQQEAETEATGGGDNEESESRDAEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00543222;
90% Identity: iTF_00605745;
80% Identity: -