Basic Information

Gene Symbol
ct
Assembly
GCA_037075285.1
Location
JBAMCF010000413.1:3364882-3400265[+]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 6.6e-27 7.2e-23 80.7 0.0 3 72 1017 1087 1015 1092 0.95
2 3 6.5e-32 7.1e-28 96.7 0.0 3 77 1481 1556 1479 1558 0.96
3 3 4e-31 4.3e-27 94.2 0.0 3 76 1758 1832 1756 1835 0.96

Sequence Information

Coding Sequence
ATGCCGCATGCTGCAACTTCAGAGGGTGTGGTGGCCAAGAAGGGGCGCGCTACCCTGGCCGAGAAGGAAGTGAACACACTCAAAGAGCAGCTATCCACAGGCAATCCCGAGAACAGCGACAACAGCGACACAGcaacagttgcagcagcaaccaaCGACAGTGAGGaggatcaacagcagcagcagcagctacaaCAGCAAAGCGACAGCGACAAGCTGCTGAACAGCTCCATTGTTGCAGCGGCCATAACGCTGCAACAGCAGAACGGCAGCAATCTGCTGGCGAACACAAATACGCCGTCGCCCTCGCCGCCGTTGCTCAGcgccgagcagcagcagcagttgcagagCAGTTTGCAACAGAGCGGCGGTGGCGCCTGCCTCAATCCGAAGCTCTTCTTCAATCACGCCCagcagatgatgatgatggaggCGGCAGctgcggcagcagcggcggcattgcaacagcagcagcaacagcaacagcaatcgcCGTTGCATTCGCCGGCGACAGAGGTAGCAATTCCCGCAGaacagccagcagcaacaacaggagcggcaacagcagcagcaacaccgaTTGTCaagagcagcagcggcagcagcagcaacatcaatcacaacaacaccagcaacaataGTCACCAGGACCAGGATGAGGAACTGgatgatgaggatgaggaggaggaggatgaggacgaggacgatgaGGAGGAGAATGCCTCGATGCAATCGAATGCCGATGATATGGAGCTGGATGCACAGCAAGAAATCAGAACTGAGCCAAGTGCAACAACGCAACAACAGCAGGATCTTGCGGATCTTGACGAGCAGAACAAGGATGCGGGGGAGGCTAGTTTAAATGTTAGCAATAATCACACAACCGATAGCAATAATAGTTGTAGTCGAAAGAACAACAATGGTGGCGGCAATGAGAGTGAGCAACATGTTGCCAATTCGGCGGAGGACGATGATTGCGCCAACAACAATACGAACaccagcaataacaacaataccAGCAgcaccgccaccgccaccagcaacaccaacaacaacaacaacaacagcagcagcggcaacagcgagaagcgcaagaagaagaacaataacaacaacaatggccagCCTGCTGTTCTATTAGCTGCCAAAGATAAAGAGATTAAAGCACTTCTGGACGAACTGCAACGCCTGAGGGCGCTGGAGCAGACGCATCTGGTGCAAATCCAGCGACTGGAGGAGCATTTGGAGGTCAAGCGTCAGCACATAATGCGATTGGAGGCGCGTCTCGATAAGCAGCAGATCAATGAGGCGCTCGCCGAGGCCACGGCATTGGCGGCAGCAGCTGCcaccaataacaacaataatagccAGAGCAGCGACAACAATAAGCAGAGCAACAATGCAGGAGAAGCCGCCACACCGCTGGATGCGTCATCATCCGTCATCAGCATTGGCGATCTGCCGGAGGCCACAAAGACTTCGGCAGCAGTTCCtcctgctgccgccgctgaggatgaggacgaggacgaggatcaGGCCATGCTGGTGGACTccgaggaggcggaggagaagccagaggagcagcagcagggtgacatcgacgacgaggaggaggaggaggccgagGATCGGGAGGCGGTCAATGccaacaccaccaccaccaccaccgatAGCAACGAGCTCAAAATCAAAAAGGAACAGCACAGTCCGCTGGATCTGAATGTGCTCAGTCCAAATTCAGCTTTGGCCACTGCAGCTgcggccgccgctgccgccgcctgcgCCAACGACCCCAACAAATTCCAGGCGCTGCTCATCGAGCGGACCAAAGCCCTGGCCGCCGAGGCGCTCAAGAATGGCGCCAGTGATGCCATCAGCGAAGAAATCAGCcgaaatgaagaagaagaagaagaatcgCCAGCAGCTATAAATGCAACTCTGGCCACACTGACACCACCTGAAACAACAAACGAAACGGAAACAAAAACGAATAATGACATGGCGCCCAAGCAGGAAATCGATGAtgtggatgaggatgaggatcaTCCTTCGGTCAACCTGGTCAACGATTATTGGCGACGTGGCTTTGAATCCTCAGCGAATAATGTGAATGCAAATATGAATACCAGTTCGAATACAAATGCAATGCCAGGGAGCAAAACGCCAATAAATTATCAAAATCTTAGGGCCGAGCAGCAGGCACaattgctgccgccgccgccaccaccgTTGCCCCCCCAGCAACATCTACACTTtccacagcaacagcaacaacaacaacagcaacaacagcaacagcagcaacatggaCCATCGTCCACAGCCCTGCTTAGTCAACTGGTTAACTCAACATTTTCCAACTCTTCCAACTCTTCTCGCCTAGAtgcccaccaccaccagcagcagcagcagcagcaacaccaccagcaacagcagcaacatcaccagcagcagcagcaacaccaccagcagcagcagcagcaacaccaccatcagcaacatcatcatcacctGCAAAATAGCGGCAGCAATAGCAATCCAGCCACCAACAGCGATAGTTTGAACTTGAATCATCATGGCCATCACTTGCATCATTTGCATCACTTACATCACGAATCCAGTTCGAATTCGAGTACGCCGTCGGGTACGGCGGCGTCTGGGAACGGTGGTAGCAACAATGCTAGCAACCAGGCCACCCAGGCCACCGCTCAGCTGGCCGCCAGTTTGGCCAGCACCTTGAATGGAGCCCAGAAATCGCTGCTGCAGGAGGATAGCAATGGAttggccaccgccgccgcaATGGCCGCTCATGCCCATTTGGGTCCCGCGGGTTTCCTGCCCGGACTGCCGGCCTTTCAGTTTGCCGCCGCCCAAGTGGCCGCCGGTGGTGGCGATGGACGTCACTATCGTTTCGCCGATTCGGAACTCCAGTTGCCGCCTGGCGCCTCGATGGCCGGCCGTTTGGGCGAATCGCTGATACCCAAGGGCGATCCCATGGAGGCCAAGCTGCAGGAGATGCTGCGCTACAACATGGACAAGTATGCCAATCAGGCGCTGGATACCCTGCACATTTCGCGTCGCGTTCGGGAACTCCTGTCGGTGCACAACATTGGCCAGCGGCTGTTTGCCAAGTACATATTGGGCCTTTCGCAAGGCACCGTTTCGGAGCTGTTGAGCAAACCCAAGCCCTGGGACAAGCTGACGGAGAAGGGACGGGATAGCTACCGCAAAATGCACGCCTGGGCCTGTGACGATAATGCCGTCATGCTGCTCAAATCGCTGATACCCAAGAAAGATTCTGGCCTGCCGCAGTATGCGGGTCGTGGAGCCGGCGGCGCTGGCGGCGATGATTCCATGTCCGAGGACCGGATTGCCCACATCCTCAGCGAGGCCTCGTCGCTGATGAAGCAGACGAGTGTGGCCCATCGGGAGCATCGGGAGCTCCAGCAGGAGCGTCGCAGTCACGGCGGCGGCGAGGATTCGCACAGCAACGAGGACAGCAAGTCGCCGCCGCAGAGCTGCACCTCGCCCTTCTTCAAGGTCGAACAGCAgctgaagcagcagcagcagcaccagcagcagcagcatctcaCTCCCGAACAGGCAGCGGCCGCCCAGCAGAGGGAAAGGGAGCGGGAgcagagggagagggagcgagagcagcagcagcgactgAGGCACGAGGACTTGGCCCAGGACAAGATGGCCCGGCTCTACCAGGAGCTAATTGCACGCACTCCCAGGGAGACGGCCTTTCCAAGCTTCCTCTTCTCACCCTCGCTGTTCGGAGGAGCCGCCGGCATGCCGGGAGCGGCTGGCAATGCCTTTCCCGCCATGGCCGATGAGAATATGCGCCACGTCTTCGAGCGCGAGATCGCCaagctgcagcagcaccagcagcagcaggcgcagcaacagcagcaggctgCCGCCGCCCAGTTCCCCAACTTCTCGAGCCTGATGGctctgcagcagcaggtgcTGAACGGCGCTCAGGATCTCTCgctggccgccgccgccgcctccaaGGACATCAAGCTGAATGGCCAGCGATCCTCGCTGGAGCACAGCGCcggcagcagtagcagctGCTCCAAGGACGGCGAACGGGAGGAGGCCTACCGCAAATCCGAGGGTGGCGGCACACCAGCTCCCCCAGCACCGCCAGCGGGAGCAGCTCCATTGCCCAGTGGAGGAGCACCAGCTGGAGCAACCAGCGGCAGCTCGGCGGCGCCCAGTCCGCTGAGTAACTCCATCCTGCCCCCAGCATTGAGCAGCCAGGGCGAGGAGTTCGCCTCCACAGCCAGTCCGCTGCAGCGCATGGCCAGCATCACCAACTCACTGATCACCCAGCCGCCGGTGACGCCGCATCATAGTACTCCACAGCGACCCACCAAGGCGGTGCTGCCTCCGATCACCCAGCAGCAGTTCGATATGTTCAATAATCTCAATACAGAGGACATTGTGAGGAGGGTCAAGGAGGCCCTCTCCCAGTACTCCATCTCCCAACGCTTGTTTGGCGAATCTGTGCTGGGACTGTCGCAGGGTTCCGTCTCCGATCTGCTGGCCAGGCCCAAGCCCTGGCACATGCTCACCCAAAAGGGTCGGGAGCCCTTCATCCGCATGAAGATGTTCCTGGAGGATGAGAATGCGGTGCACAAACTGGTGGCCAGCCAGTACAAGATCGCCCCGGAGAAGCTGATGCGTACGGGCAGCTACAGCGGCAGTCCGCAGATGCCGCAGGGCCTGGCCAGCAAGATGCAGGCCGTGGGCTCGCTGCCCATGCAGAAGATGATGAGCGAGCTGAAGCTGCAGGAGCCGGGAGCTGCCCAGGCGCAGCATCTGATGCAGCAGATGCAGGCGGCGGCCATGTCGGCGgccatgcagcagcagcagcaggtggcccaggcccagcagcagcatctcgcccagcagcagcatcagcagcaacagcagcagcagcaccagcatctcgcccagcagcaacagcaacatctggctgcccagcaacagcaacatcccCATCATGCGgccgctgcggctgctgcacTGCATCACCAGAGCATGCTGCTCACCTCGCCCGGCCTGCCGCCCCAGCATGCCATCAGCCTGCCGCCGTCGGCTCCTAATCCCAACTCCAATCCCATTACCAATCCGAATCCCAATCCCAGCGAGAAGAAGCCCATGCTGATGCCTGTGCATGGCACGAATGCGATGAGGAGTCTGCACCAGCACATGTCGCCCACGGTCTATGAGATGGCTGCCCTGACCCAGGATCTGGACACGCACGACATTACCACCAAGATCAAGGAGGCCCTGCTGGCCAATAACATAGGTCAGAAGATATTCGGTGAGGCAGTCCTGGGACTCTCCCAGGGTTCCGTCTCCGAACTGCTAAGCAAACCGAAACCCTGGCATATGCTTTCGATCAAGGGACGAGAGCCCTTCATCCGGATGCAGCTGTGGCTCAGCGATGCCAACAATGTGGAGCGACTGCAGCTGCTGAAGAACGAGCGCAGGGAGGCGAGCaagcggaggaggagcacGGGCCCGAATCAGCAGGACAACAGCAGCGATACCTCGAGCAATGATACCAATGACTTCTACACCAGCAGTCCGGGACCGGGTTCGGTGGGCTCCGGAGTGGGTGGAGCACCGCCCAGCAAAAAGCAGCGCGTGCTCTTCTCCGAGGAGCAAAAGGAGGCTCTTAGGTTGGCCTTTGCCCTGGATCCCTATCCCAATGTGGGCACCATTGAGTTTCTGGCCAATGAGCTGGGCCTAGCCACTCGTACCATCACCAATTGGTTCCACAATCATCGCATGCGCTTGAAGCAACAGGTTCCCCATGGTCCCGCCGGCCAGGATAACCCGATACCCAGTCGCGAGAGCACCAGTGCCACGCCCTTCGATCCCGTCCAGTTTCGCATCCTGCTGCAGCAGCGTCTGCTGGAGCTGCACAAGGAGAGGATGGGCATGAGTGGTGCCCCGATTCCATATCCTCCATACTTTGCGGCCGCTGCCATTTTGGGCCGAAGTCTGGCGGGGATTCCAggagcggcggcggcggcaggagcagctgcagcagctgcggcCGTGGGAGCTGCCACCGGCGATCAGCTGCAGGCCCTGAATCAGGCCTTCAAGGAGCAGATGAGCGGCCTGGACCTCTCGATGCCCACGTTGAAGCGCGAGCGCAGCGATGACTATCAGGAGCTGGATCTGGAGCTGGAGGCGGGAGGCTCGGGTCACAATCTCAGCGACAATGAGTCCGAGCTGGAGGGTCAGGAGGCGGAGGACAAGACGACCAGCGACTACGAGAAGGCTTTGCATAAGTCCGCCctggccgccgccgctgcctacATGTCGAATGCGGTGCGAAGTTCGCGACGCAAGCCGGCTGCCCCCCAGTGGGTCAATCCCGCCGGGGCGGTGACCAATCCCAGTGCCGTGGTAGCCGCcgtggcagcggcagcagcagcagctgcggcaGCGGACAACGAGCGCATCATCAATGGGGTGTGCGTGATGCAGGGATCCTCCTCCGACGGGCCAACAGATGGCAACAACGAGGATTCGGAGGACCATGAGCATGCCCAGCTGGAGATCGATCAGCGTTTCATGGAGCCGGAGGTGCACATCaagcaggaggaggacgacgacgaggaggagcagccagTGGCGGCGGTGGAGAACAGCGGCGAGGAGAACAGTGAGCTGAAGCTGAAGGTGGTCAACGAGGAGAAGCTGCGAATGGTGCGGGTGCGACGACTGAGCAGCAACGGTGGTGGCTCCTCCGAGGAGATGCCTGCCCCGCTGGCGCCTCCACCATCAGCGGCGGTCACTTCATCCTCCTCTACTTCATCCAGTGGGGCAGTGGAGggcagcagttgcagcagtTCCAGCAGCTCCACACCGGCAGtgaccacagcagcagcagccagttGGAATTACTAG
Protein Sequence
MPHAATSEGVVAKKGRATLAEKEVNTLKEQLSTGNPENSDNSDTATVAAATNDSEEDQQQQQQLQQQSDSDKLLNSSIVAAAITLQQQNGSNLLANTNTPSPSPPLLSAEQQQQLQSSLQQSGGGACLNPKLFFNHAQQMMMMEAAAAAAAAALQQQQQQQQQSPLHSPATEVAIPAEQPAATTGAATAAATPIVKSSSGSSSNINHNNTSNNSHQDQDEELDDEDEEEEDEDEDDEEENASMQSNADDMELDAQQEIRTEPSATTQQQQDLADLDEQNKDAGEASLNVSNNHTTDSNNSCSRKNNNGGGNESEQHVANSAEDDDCANNNTNTSNNNNTSSTATATSNTNNNNNNSSSGNSEKRKKKNNNNNNGQPAVLLAAKDKEIKALLDELQRLRALEQTHLVQIQRLEEHLEVKRQHIMRLEARLDKQQINEALAEATALAAAAATNNNNNSQSSDNNKQSNNAGEAATPLDASSSVISIGDLPEATKTSAAVPPAAAAEDEDEDEDQAMLVDSEEAEEKPEEQQQGDIDDEEEEEAEDREAVNANTTTTTTDSNELKIKKEQHSPLDLNVLSPNSALATAAAAAAAAACANDPNKFQALLIERTKALAAEALKNGASDAISEEISRNEEEEEESPAAINATLATLTPPETTNETETKTNNDMAPKQEIDDVDEDEDHPSVNLVNDYWRRGFESSANNVNANMNTSSNTNAMPGSKTPINYQNLRAEQQAQLLPPPPPPLPPQQHLHFPQQQQQQQQQQQQQQQHGPSSTALLSQLVNSTFSNSSNSSRLDAHHHQQQQQQQHHQQQQQHHQQQQQHHQQQQQQHHHQQHHHHLQNSGSNSNPATNSDSLNLNHHGHHLHHLHHLHHESSSNSSTPSGTAASGNGGSNNASNQATQATAQLAASLASTLNGAQKSLLQEDSNGLATAAAMAAHAHLGPAGFLPGLPAFQFAAAQVAAGGGDGRHYRFADSELQLPPGASMAGRLGESLIPKGDPMEAKLQEMLRYNMDKYANQALDTLHISRRVRELLSVHNIGQRLFAKYILGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWACDDNAVMLLKSLIPKKDSGLPQYAGRGAGGAGGDDSMSEDRIAHILSEASSLMKQTSVAHREHRELQQERRSHGGGEDSHSNEDSKSPPQSCTSPFFKVEQQLKQQQQHQQQQHLTPEQAAAAQQREREREQREREREQQQRLRHEDLAQDKMARLYQELIARTPRETAFPSFLFSPSLFGGAAGMPGAAGNAFPAMADENMRHVFEREIAKLQQHQQQQAQQQQQAAAAQFPNFSSLMALQQQVLNGAQDLSLAAAAASKDIKLNGQRSSLEHSAGSSSSCSKDGEREEAYRKSEGGGTPAPPAPPAGAAPLPSGGAPAGATSGSSAAPSPLSNSILPPALSSQGEEFASTASPLQRMASITNSLITQPPVTPHHSTPQRPTKAVLPPITQQQFDMFNNLNTEDIVRRVKEALSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDENAVHKLVASQYKIAPEKLMRTGSYSGSPQMPQGLASKMQAVGSLPMQKMMSELKLQEPGAAQAQHLMQQMQAAAMSAAMQQQQQVAQAQQQHLAQQQHQQQQQQQHQHLAQQQQQHLAAQQQQHPHHAAAAAAALHHQSMLLTSPGLPPQHAISLPPSAPNPNSNPITNPNPNPSEKKPMLMPVHGTNAMRSLHQHMSPTVYEMAALTQDLDTHDITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDANNVERLQLLKNERREASKRRRSTGPNQQDNSSDTSSNDTNDFYTSSPGPGSVGSGVGGAPPSKKQRVLFSEEQKEALRLAFALDPYPNVGTIEFLANELGLATRTITNWFHNHRMRLKQQVPHGPAGQDNPIPSRESTSATPFDPVQFRILLQQRLLELHKERMGMSGAPIPYPPYFAAAAILGRSLAGIPGAAAAAGAAAAAAAVGAATGDQLQALNQAFKEQMSGLDLSMPTLKRERSDDYQELDLELEAGGSGHNLSDNESELEGQEAEDKTTSDYEKALHKSALAAAAAYMSNAVRSSRRKPAAPQWVNPAGAVTNPSAVVAAVAAAAAAAAAADNERIINGVCVMQGSSSDGPTDGNNEDSEDHEHAQLEIDQRFMEPEVHIKQEEDDDEEEQPVAAVENSGEENSELKLKVVNEEKLRMVRVRRLSSNGGGSSEEMPAPLAPPPSAAVTSSSSTSSSGAVEGSSCSSSSSSTPAVTTAAAASWNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00536665;
90% Identity
iTF_00578314;
80% Identity
iTF_00536665;