Dlow005783.1
Basic Information
- Insect
- Drosophila lowei
- Gene Symbol
- -
- Assembly
- GCA_008121275.1
- Location
- CM017777.1:38872938-38878876[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0091 0.68 10.4 0.3 1 23 1319 1342 1319 1342 0.95 2 13 6.5 4.9e+02 1.4 0.2 1 23 1505 1527 1505 1527 0.91 3 13 0.00015 0.011 16.0 2.7 2 23 1530 1551 1530 1551 0.97 4 13 5.6e-05 0.0042 17.3 0.2 3 23 1559 1579 1557 1579 0.98 5 13 4.7e-07 3.5e-05 23.9 4.1 2 23 1586 1607 1585 1607 0.97 6 13 4.4 3.3e+02 1.9 0.4 5 23 1620 1638 1618 1638 0.96 7 13 1.1 82 3.8 5.4 3 23 1645 1666 1643 1666 0.93 8 13 0.12 8.7 6.9 0.2 2 23 1677 1697 1676 1697 0.96 9 13 4.5e-05 0.0033 17.6 0.4 1 19 1703 1721 1703 1725 0.95 10 13 2.8e-05 0.0021 18.3 0.4 1 23 1733 1755 1733 1755 0.98 11 13 8.4e-05 0.0063 16.8 7.6 1 23 1761 1783 1761 1784 0.96 12 13 0.00018 0.013 15.8 6.5 1 23 1789 1811 1789 1811 0.98 13 13 0.0022 0.16 12.3 6.1 1 23 1817 1839 1817 1840 0.96
Sequence Information
- Coding Sequence
- ATGGTCGACAGCGTGCAGTGCCCCGTGTGCACCTTGTACCTGCATGCGGGTATGAATCTCTCCGACCATCTGGAGACGCATCCGAAGGAGCAGGTCATCAAGGCGCTGGTGCAGATGACAATTGTGGGCAACACTGGCATGGGCAATGCCCTGGCGGCGGCCATGCTGGGCGACGgctcatcagcagcagcgggaggTGCAGATGCCGGGGGCTCCGACGACACCGCCGCCCCCGCCTCAACATCGTCTCCATCTGTGGCTGATGTTAAGCCAGTTGTTGTGTCCGCCAGCTCATCGATAGCCAAACCAATAACATCGACCTCTAATGCGCCGCCGCCACTCTCCTCCTCACAAACttccccctcctcctcctccgttgttgctgccacagcgaacagcagcagcagcagcaaattgAGCAATCCACCGATGAAAGCACTGAAATGCGCACCGCCCACGACTGAGGCGCGAGCCAACAACACATCCGCACCCACCACAAGCAGCGCAATGACCGCACTGTACCAGCCACCGCTGGTCACCACGGACTATCGCTACACTaatccgcagcagcagcagcagcaacaacagcagacgAGCTTTGGGCGTGGTGCCACCaccgccacagccaccgccaccgccacttTGGTTATACCGCAGGTGCCACATCAGCACTTCCTCGCCAGCagccatcagcagcagcagcatcagacCCACTTTgcccatcagcagcagcatcctggCCTGAAGTTTACCTACGCCACCACGCTGCCGCCCCCTCCACCGCTGCAGCTCTtcacgcagcagcagcaacagcagcagcagcagcagacagcaaCGCAACCGCACCAGAAACCTCCTCCCGCCTATGGAGCCGCCATCAGTCAAATACGATCTCAGCACAACcaaaacaagcaacaacatcagcagcagcaacagcaacagcagcagcagcaacaacatgtGACCGTTCATCATAACGTTACCCTAGCACCACCGACGaccccaacagcagcagctggaggaaAGCATAGCGGCAAAGCACACACGGAAGTGTTCCTGAATCCCCCACCaccgccgctgccaccgcaGGCGCAtgggcagcaccagcagcagaaccagcatcatcatcaccatccgcaacaacagcagcagcagacacagCAGTCCTCGATGCCAGTGGCCCTTACAACTGCTGCCACcagacagcaacagcagccggtGACATTGCAGACCTACGGATCGAGTGCAGGCagctgctcctcttcctccttGCCCGCCATCTCAACGGCTGGTCGAACGAGCCGTCAGACCAACTCTCCCTTCGGGGCATTGCTCAatgctgcggcggctgctgccagCTCCTCGCCATCGTCCGCATCTGCCGCCTCGGTGCTGCGCTACGCGGAGTCGCCGGTGGCTCATTATCTGGAGCGGGAGAATGGGGACTTCATTGTCCAGGAGACGCCCAAGCACATTGTGGAGTGCGTTGAGAAGGAGGACGGGGAGTTCTCCGTGATCGAGCGCATTTACCAGTCGCCTCCGAGTGTTCTCCACAtacacgacgacgacgaagacgacgacgacgacgacgatgaagaggaggaggaggagaacgaGGCGGCACTGCAGGACGAGCACGATCATGTGGAGGATGGGGACGATGAGCGGGACGAGAACAGCCGCTGCCGAAACTTGACCAAAACAACGAAGAAGTCGCGCAAGACAAAGCCCAAGCGAACCTCAAAGAAAAGCCCCCGGCAACATCTCTCGGACGAGGAGTTCATGAGCATCAGCAGCGGCTGCGAGAGCGACTCCGAGTCCGATACGAAGGTGGAGGTCCAGGCGGTGGCGCCACCCCCTCTATGCACGGCCCCATCCACGAGCAGTGCCGCGGCGGCCGCCGGAGTCGCCTCCGCGTCCACCCTAGCAGACGGCCATTCGAACTCCACTTCGAACTCCAATTCGAACTCGAATGCCAAGTCCAAGAAGAACCGCATCACAGTGCTCAGCGATGTGCCGCTCAACATGAACGAGTACCTTGATCTGATGGGCAACATCGTGGCCTCCAGTCGTATCGGCACCTCTCGGCCATTTGCCGCCGTGGCGCCCATTCCACTGGTCAAGGTTGAGAAGGAAGAGCCAATAGATGAGTACGACAATTCGGCGCATTCGGATGCGACGGATCCCATGCTGCTGTTGGATCATAAGCCCAGCTTGGAGCAGAGCTGTGGGGGAGGACATGGCACCACCAGCGTCATCCGCATGGCCAGCGGCATGTCGGCGGCCACGGAGGACTTCACCCAGCCGCCACCCATGAAGGTCGAGGTCGAGCCGACGACGCTGCTACCTCAGCGGTTCTCGACACCTGCCCAGCTTCGTGGACCCAAGAAATTAGTCATCAAACCAAAGGCCacggcaacgacgacgacgacgacaacaaaacaaaagactgACACCCCATCTTCCTCGAGCGCGGATCCGCTGCTGCCCtcaacatcaacatccacCTGCACCTCCCTATCCATATCGAAATCCGCCACGGAGCTGGTCCACATTAAGAGTGAGATCACGGAGATGCCGTCGAGCAGCATCCTCGAGAAGCATCTGACCACACGGAAGCACTCGACGGTGAACGACGACGATGCTCGAGTGCTGCTGGAGTTTGCCAATTCGAAGCAGCCGGCGACTCTCGCAGGCACCGCCTCTAGCACCACCTTTGTAGTGAATGCCAATTCGGGCTTCCCCTCAGCGGGCTCCGTGTTTGCCAGCAGTACAGCGCACAGCAGCACGGGCATGGGGCAGAAGCCGGGCCAAGCCAAGCCGGGCGAGGAGTACATTCTGCCGGACAACAATCTGGAGGTGGATGAAATTGTGATATCCTCCTCGTCTTCCTACGCCTCATCCGTGGCGCAGGTCCATCCatcgctgccgctgtcgctaCAGCCGCCCGCAGCGGCCGCATCCATTAACGACTTCAATTTCCTATACCAGCAGACCACGAGCACGGCGACGACGTCCGCGAACTGCGCCTACTTCACGCCCTTCGCCCttcgacaacaacagcagcagcaacagacgCAGCACGGAGTCAGCGATGCCACGAATGCAGCCACCTTGGCCTCCTCTTCCAGCAATTCCTCGGCGATGGATCACGACTCGATGAATGCCACCTTTCGGGTGGCCAAGACGCAGTCGCTTCAGTCCTGGTATCAGTTAGATCAAGACCACGATCCACAGCATgagtcagcagcagccgccgcagcagcagcggcatcggGAGCGGGAGCCTCCTCCTCTAGCCAAAACCAGAATCATGAAGGGGCCCAGCCCACCAACTTCAATGCCGCGTTGGCTGCCGTCGATTGCTGCAGTGTAGCCGTTGACGGCGATGTCAAGTATCTGGATCTGGACGCGTGCAAGCGGGAGCagctgagcagcagcagcaatctgCCATCGGCATCCGCCTCCACATCGACAACATCTTCATCGTTCGCTGGGGCGGCAACGGAGAGCAGCCTCGTGGGGGGCCTCAACATACGCACCGATGAGAAAATGCCCGCCAAGGGCGAAATCTCAGAGCAGGAGAGCAACTGCGACATCGAGAACTCGTGGAGTCAGTCGGTGTACGGCGACATATCACAGCGATACTTTAGGAATCAGTTCACTGGCGGCTACAACCCTGACTGGAGGCAAGACTACTATCCGGTGCAGGATCTCAGCGCCCAACAGCGGGAGCACAAGCGGTTTGATTTTAATACTGTCGACGAGGAGGCCTCATCCAGCTCCAGAAAGAGTCATCTAATTGATGAGCAGCCGGCAGCCACCACTTCCTCTGCGTCTTCGGCATTGCTGGCTGGTCCACCAATCGCTTCAACGTCCAGGGCTGCCGCTGAGGCGGCGGAGGCGGCAGCTTCGGCCGCTTTGGTTCAGCGCAAGCCGCAGCGTCGCAAGCTCTACAAGTGTCCGCATTGCGAGGCCATCTTCGAGAAGCTCAAGGAGCGGAATGCGCACATGATTGGCGAGCACAACTATGTGCGTCAGAATCGACGTCTGATTTGCACGCAGCCGCAGATTAGCGCCCCGATGCTACCCCCACCGCCgtcccagcagcaacagcaccaccaGCTGCTCATGCACGcaggcgtgggcgtgggcgtgggcaaCGGTGGCGAGGAAGCCATGCATGAGGATTCCAAAGATGGCATTGTCAAGATCAAGCAGGAACAGTGCCAGGACAGGCCGGATGTCGAGCAGATAGAGACCAGCCCCGAGCTACTGACCGATGTCAAAGATGCCGAGCTGCTGGGCATTGGCGATGGTGAAGCGGATGGTGATATCAAGCCGCCCAGCCAGCTGGACCAAAAAATGACCCTCCCGCCATTAGCGATGACCACGCCGGCCGCCAAATTGGCGGCCTTATATAGAATGCTTATTTCCTACAACGAGTCCAAGCTGGGACAGGAGCGCAACAACCTCAACGAGCTGGAGCAGAAGGCGATGGAGAAGTCCATCTTTCTGTGCTATGTCTGCCGCACCGACTTCCCCTCCGTTAAGCTCTACGATGCGCATCTCACGGAGCATCCCGCCGAGTGCTTCACCTGTGGCAAGAAATTCTATAGGTGGAAGAACTTTTCCCTGCATCTGAAGCGCCACTTGGGCTGGAAGGAGTTCGGCTGCTATGTCTGCGACAAGAAGTTTGTCGTGCGCAGCGCCCTCGTGGAGCACATGCGCATGCATACGGGCCAGACGCCGCTCAAATGCAAGATATGCGGCAAAAAGTTTAAGCGGTACTCAAACTTGACGCAGCATCGCAAGCGTCACACAAAGGTGATGGTGCGCAAGAAGGAGTACGTCTGCCACTGCGGCGAGGTGCTGCCGTCAAAGGCGCGCTTTCTCTGGCACAAGGAGACGCACGACGTGAAGCCCAAGTGTTGCCCGTATTGCTGCGATCGATTCGTGCACGCCAACTCGCTGCGCCGCCACATACGGCTGGCTCACTCGGATAAGTTCGACTACGCCGAGCCGATGGAGTGTCCCATGTGCAAGCAGATCTTTGCCAAGACCTCGATCAAGGCGCACATGGCCACGCACTCGACTGATCCGCAGTACGACTGCGCCATCTGCAACAAGAGCTTCTCTACCAAATGGAATCTCAAGATACACTCGTGGGTGCACGCCAATCGGACGGCGAAACCGTTCAAGTGCGAGTACTGCCCAAAGGCGTTTGTGCGAGAGCTGGACTTCAAGAACCACATCAACGCACACAAGCAGATCAAGCCGTACACCTGCGAGTACTGCGGCTGCAAGTTCATACGAAAGTACAACTACATGCGGCACCGACGCGAGCACCACGGCACCAAGAAGTTCACCTGCGACCAGTGCGACAAGTCATTCCATCGGCACTACTATTTGATCGAGCACCGGCGCATGCACACGGGCGAGCGACCTTTCACTTGCACCATATGCGGCAAGAGCTCCACCACCAAGACCAATCACAACAAGCATCTGAAAATCCATCACTCGCGTGATCCCTTCACCGTGGAGGTCTAA
- Protein Sequence
- MVDSVQCPVCTLYLHAGMNLSDHLETHPKEQVIKALVQMTIVGNTGMGNALAAAMLGDGSSAAAGGADAGGSDDTAAPASTSSPSVADVKPVVVSASSSIAKPITSTSNAPPPLSSSQTSPSSSSVVAATANSSSSSKLSNPPMKALKCAPPTTEARANNTSAPTTSSAMTALYQPPLVTTDYRYTNPQQQQQQQQQTSFGRGATTATATATATLVIPQVPHQHFLASSHQQQQHQTHFAHQQQHPGLKFTYATTLPPPPPLQLFTQQQQQQQQQQTATQPHQKPPPAYGAAISQIRSQHNQNKQQHQQQQQQQQQQQQHVTVHHNVTLAPPTTPTAAAGGKHSGKAHTEVFLNPPPPPLPPQAHGQHQQQNQHHHHHPQQQQQQTQQSSMPVALTTAATRQQQQPVTLQTYGSSAGSCSSSSLPAISTAGRTSRQTNSPFGALLNAAAAAASSSPSSASAASVLRYAESPVAHYLERENGDFIVQETPKHIVECVEKEDGEFSVIERIYQSPPSVLHIHDDDEDDDDDDDEEEEEENEAALQDEHDHVEDGDDERDENSRCRNLTKTTKKSRKTKPKRTSKKSPRQHLSDEEFMSISSGCESDSESDTKVEVQAVAPPPLCTAPSTSSAAAAAGVASASTLADGHSNSTSNSNSNSNAKSKKNRITVLSDVPLNMNEYLDLMGNIVASSRIGTSRPFAAVAPIPLVKVEKEEPIDEYDNSAHSDATDPMLLLDHKPSLEQSCGGGHGTTSVIRMASGMSAATEDFTQPPPMKVEVEPTTLLPQRFSTPAQLRGPKKLVIKPKATATTTTTTTKQKTDTPSSSSADPLLPSTSTSTCTSLSISKSATELVHIKSEITEMPSSSILEKHLTTRKHSTVNDDDARVLLEFANSKQPATLAGTASSTTFVVNANSGFPSAGSVFASSTAHSSTGMGQKPGQAKPGEEYILPDNNLEVDEIVISSSSSYASSVAQVHPSLPLSLQPPAAAASINDFNFLYQQTTSTATTSANCAYFTPFALRQQQQQQQTQHGVSDATNAATLASSSSNSSAMDHDSMNATFRVAKTQSLQSWYQLDQDHDPQHESAAAAAAAAASGAGASSSSQNQNHEGAQPTNFNAALAAVDCCSVAVDGDVKYLDLDACKREQLSSSSNLPSASASTSTTSSSFAGAATESSLVGGLNIRTDEKMPAKGEISEQESNCDIENSWSQSVYGDISQRYFRNQFTGGYNPDWRQDYYPVQDLSAQQREHKRFDFNTVDEEASSSSRKSHLIDEQPAATTSSASSALLAGPPIASTSRAAAEAAEAAASAALVQRKPQRRKLYKCPHCEAIFEKLKERNAHMIGEHNYVRQNRRLICTQPQISAPMLPPPPSQQQQHHQLLMHAGVGVGVGNGGEEAMHEDSKDGIVKIKQEQCQDRPDVEQIETSPELLTDVKDAELLGIGDGEADGDIKPPSQLDQKMTLPPLAMTTPAAKLAALYRMLISYNESKLGQERNNLNELEQKAMEKSIFLCYVCRTDFPSVKLYDAHLTEHPAECFTCGKKFYRWKNFSLHLKRHLGWKEFGCYVCDKKFVVRSALVEHMRMHTGQTPLKCKICGKKFKRYSNLTQHRKRHTKVMVRKKEYVCHCGEVLPSKARFLWHKETHDVKPKCCPYCCDRFVHANSLRRHIRLAHSDKFDYAEPMECPMCKQIFAKTSIKAHMATHSTDPQYDCAICNKSFSTKWNLKIHSWVHANRTAKPFKCEYCPKAFVRELDFKNHINAHKQIKPYTCEYCGCKFIRKYNYMRHRREHHGTKKFTCDQCDKSFHRHYYLIEHRRMHTGERPFTCTICGKSSTTKTNHNKHLKIHHSRDPFTVEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00471815;
- 90% Identity
- iTF_00487461;
- 80% Identity
- -