Dlow009569.1
Basic Information
- Insect
- Drosophila lowei
- Gene Symbol
- fru
- Assembly
- GCA_008121275.1
- Location
- CM017778.1:22301358-22303508[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.5e-12 9e-09 34.8 0.1 1 44 395 438 395 439 0.91 2 2 8 1.6e+04 -5.1 1.3 4 15 541 552 541 554 0.72
Sequence Information
- Coding Sequence
- ATGGGCGGGCCCACAGCGCCCGTGGCCGGCAGCGAGGGCCAGACGTACTGCCTGCGCTGGAACAACCACCAGACCAATCTGGTGCAGATCCTGCACGCACTGCACGAGGTCGGCAGCTACGTCGACTGCACCCTAGTCGTCGACGATGAGCAGTTCAAGGCACACCGCGTGGTGCTGGCGGCCAACTCGCCGTACTTCCAGCACATCCTGCAGGACGTGCCCCAGGACCAGTGCAGCATAATCCTGCCGGGCGTGAGGGGCTTCGAGATCGCGGCCTTGCTTCAGTACATGTACACGGGCGAGACCACGGTGACCAAGAGCCAGGAGCCGGAGATCCTGCGCACTGCCAAGGAGCTGCAGGTGAAGGGGCTCTACGACAATCTGATGAAGTACAATCACAAGGCGGCCAGCGCGGCGGAGGAGCGTGTCCAGAGCCAGTTCCATGCCAGCATCACGCCCACCTCCAGCTCGGGACTGGGCGCTGGCTCTGGCAAGCCCCTCAACGGGTCCTCTGCCGACGGCTCCTTCggccagcagcaccacaaCTCCTCCTCCGTGATCTCAACGTCCACGCACATCTCGCCCAGCGCCGCCATCTCGAGCAGCTGCTccccaccgccgccgccattcGGAAGCTACCAGCCGCCCTACACAAACTTCCCGCCTGGATCGGGAGCTATCAATCCACATCCCCACATCCCAGCCGGTGAGACTCCCCTGACGCCCACGCATGCCGCTTCGCACGCCGTAGCCGGTGAGGCAGGCCAGTGGCCCCTCTCGCcctccgctgccgctgccgccatGCTGAACTCCGTGTATGAGTCCGCAGCCGACATGAATCCGCTCAAGCGCAAGAAGCTCTCGGCCATCTCGAGCATGCTACTCAACAGCACCCGGGACACGCCCATTCTGCGCAACGTGCTGGCCCAGGCCAACCCAGCTGACTCCTCGCAGCCCAATCCTCTGCTGCTGAAGagctcctccacctcctccctAAACGAGAAGACTCCCACccatcagcaccaCGTCGGCGTGAGCGGCGGAACCGGTAGCCACAGCTTCAACGGCTCGGACTACGGCGGCGACAAGGAGCCCCTATCACCGCACACGGACCGTTCCTTTGATGAGGAGACTGGCGGGCCGGGCGGCAAGAAGCCGGAGTGGAAGCGTTATAAGCAATACACCCGGGCGGACATGATGTGTGCCATTCAGGCCGTTCGCGAAGGCATGAGCGCGCTCCAGGCGAGCCGCAAGTACGGCCTACCCAGCCGCACCCTCTACGACAAGGTCCGCAAGCTGAACATCACTACGGGCCGTGGCACGCATCGCACTCCCAAGCGCAGCCCACCCGGGGTGGAGTCCTCCGCCGCCTTTCCCTACTCCGCggcagccgctgccgcagctgcCCACAGCTACGGACATGTCCATGGGCATGGCCAGACGGATCTAGAGCGTGAGCCGAAGGAGCATGGCCAGCATAGTGGCCATGGAGGCGGCCACCACGGCATGCCACCCACCATTCCCCACTCGGCAGCCGCCCTTCTGGATCACGCCTTTCTGCAGCAGGCCCTGGAGAACCGAGGCGGGGATATGGCCGGGCGTGAAGCACTCCACGCCATGGCCCTGGCAGCGGCCGCCCACGCAGCTGCCAACCGAATGTCTAGCAGCCCCCAGGAGTCTGGGTCCAATGGACACGCAGCCAGATCTCCAAGTCCAAGGGCTCGCCACTACTCCGAGCACGAGGCCATggagatagagatggagaaGCACGAGCAGCGCCTGATCAAGAGGGAGCGTGACCAGGACGAGCGCGAAGACGCTGACGATGAAGATGATCATGACCAGGAGCAGGATCACGATCACGACCATGTGGAAGATCTCTCGCTGGCTCGCAAAGAACGCCCCGAGTCGCCCTACTCTCCTCAGCCCCCACGGGCCTCCTCGCCGGACCACGAGGACTATCCCCACTCACCACCGCCCGTGGccctgggtctgggcctgaAGCGGGAGCTACTTGGCGGCGAGGAGTCGCAGGCCAGAACCGACTGA
- Protein Sequence
- MGGPTAPVAGSEGQTYCLRWNNHQTNLVQILHALHEVGSYVDCTLVVDDEQFKAHRVVLAANSPYFQHILQDVPQDQCSIILPGVRGFEIAALLQYMYTGETTVTKSQEPEILRTAKELQVKGLYDNLMKYNHKAASAAEERVQSQFHASITPTSSSGLGAGSGKPLNGSSADGSFGQQHHNSSSVISTSTHISPSAAISSSCSPPPPPFGSYQPPYTNFPPGSGAINPHPHIPAGETPLTPTHAASHAVAGEAGQWPLSPSAAAAAMLNSVYESAADMNPLKRKKLSAISSMLLNSTRDTPILRNVLAQANPADSSQPNPLLLKSSSTSSLNEKTPTHQHHVGVSGGTGSHSFNGSDYGGDKEPLSPHTDRSFDEETGGPGGKKPEWKRYKQYTRADMMCAIQAVREGMSALQASRKYGLPSRTLYDKVRKLNITTGRGTHRTPKRSPPGVESSAAFPYSAAAAAAAAHSYGHVHGHGQTDLEREPKEHGQHSGHGGGHHGMPPTIPHSAAALLDHAFLQQALENRGGDMAGREALHAMALAAAAHAAANRMSSSPQESGSNGHAARSPSPRARHYSEHEAMEIEMEKHEQRLIKRERDQDEREDADDEDDHDQEQDHDHDHVEDLSLARKERPESPYSPQPPRASSPDHEDYPHSPPPVALGLGLKRELLGGEESQARTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00611434;
- 90% Identity
- iTF_00517637;
- 80% Identity
- iTF_00536115;