Basic Information

Insect: Drosophila longiperda
Gene Symbol: -
Assembly: GCA_035042125.1
Location: JAWNLV010000134.1:212136-214114[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.12 8.2 7.1 0.3 1 21 309 329 309 330 0.95

2 10 3.4e-06 0.00023 21.4 1.8 1 23 338 360 338 360 0.99

3 10 0.017 1.1 9.8 0.2 1 23 363 386 363 386 0.93

4 10 1.3e-06 8.5e-05 22.8 0.8 2 23 393 414 392 414 0.98

5 10 1.4e-07 9.7e-06 25.7 0.7 1 23 420 442 420 442 0.98

6 10 1.2e-05 0.00083 19.7 0.6 1 23 448 470 448 470 0.99

7 10 0.0004 0.027 14.9 4.6 1 23 476 498 476 498 0.99

8 10 0.001 0.068 13.6 0.3 1 23 504 526 504 526 0.98

9 10 0.00011 0.0074 16.7 3.7 1 23 532 554 532 554 0.98

10 10 0.00026 0.018 15.5 0.2 1 23 560 582 560 582 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.12	8.2	7.1	0.3	1	21	309	329	309	330	0.95
2	10	3.4e-06	0.00023	21.4	1.8	1	23	338	360	338	360	0.99
3	10	0.017	1.1	9.8	0.2	1	23	363	386	363	386	0.93
4	10	1.3e-06	8.5e-05	22.8	0.8	2	23	393	414	392	414	0.98
5	10	1.4e-07	9.7e-06	25.7	0.7	1	23	420	442	420	442	0.98
6	10	1.2e-05	0.00083	19.7	0.6	1	23	448	470	448	470	0.99
7	10	0.0004	0.027	14.9	4.6	1	23	476	498	476	498	0.99
8	10	0.001	0.068	13.6	0.3	1	23	504	526	504	526	0.98
9	10	0.00011	0.0074	16.7	3.7	1	23	532	554	532	554	0.98
10	10	0.00026	0.018	15.5	0.2	1	23	560	582	560	582	0.97

Sequence Information

Coding Sequence: ATGGATGTGGAGAAGATTTGTCGCACTTGCCTAAGCCTCTCCGGACCATTTCTGTCCATCTACGATGGTGGCTCTGGCAGCTGCCTGGTCGATATGCTGCGCGAATTCACCAGGACGCAGCCGCGTCGTGAGGACAATTTGCCAGCAAGAGTTTGTCTGAGCTGCATTAGCGAGATCAATCACTGCTATTCGTTTAAGCTCAAGTGCGAGAGCTCAAATCGCACGCTGCGACAACTGCTGCCCAATGCGCTGCCCGAGCCGCCCGAATTCGTGGCCAAGCCAGCCGTGGCCACTTTCGAGAAATCCATGCAAACCAACGAAGTGCAAACAGCCACAGCGGAAGCGCAAACAGATGGGGTGACCACAACAGATGCGACACAAAACACCAGCCTGCAGCAGCCAGCGTTGGTGACCGTAGAGCCACCAGAAAATGAAGAAGAGGAGGAACAAGcagaggatgaggaggaggaggagcaagAGTTTGACTTTGAGTTTACAGAAGAACAGGAGCCCGATGAGGTGCCGTCCAAAGCAAGTGCTGAAAACATAATACTACACGTGGAGAAGGACAACGAGAAGTACGAAACGGAAATGGTGTACAATAAAACAACCGGAGAGCTGCTGGAACAGAACGTCGAAAGCGTTGACAAGCAGAAGGAATACAAATATCGACTTGtcagcaatggcaatggcgaCACATTCATTTCCCCGGAGCCAGCGAGCGCTGCAGATCCCAAAGAGCCAATAACACCGGAGACACGTGCATCGTCAAAACGCCGTCgagcggctgcggctgctgctgctgttgcaccaCAACTAAAGGAGCAGACGGATGAGGAGCCGCCATCAGCTATGGCTTGCAAGAAACCAAATGTCAACTTCAATGAAACGCCTACAACTGAAGTGGAGGAGCTAAAAGCAAAATTCCACTGCGATCGCTGCAATGCCGGCTTTGCGCTGGAGAAGTCCCTGATCATCCACCGCAGGCAAAACGGCTGCACACATCGCAACTTCAAGTGCAACGAATGCAAGCGCGTCTTCGTCTCGATGGATCATCTAACCGAGCATCAGGCGACGCATGGCACGTTCATGTGCCAGGAGTGCGGACTGCGCTCCGAGTCCATGGAGCAGCTGGGCAGGCACATGGTGCAGACGCACAAACGCAATCTGCGCAATCAGTGCAACGTTTGTCAGAAGGTTTTCACAATGCTGTCAACACTGCGGGATCACATGCGCATCCACACCGGTGAGAAGCCGTTTGTGTGCAACGTGTGTGGCAAGGGTTTTACGCAGAATGCAAACTTGCGGCAGCACAAGATGCGCCACTCGGACATCAAGCGCTTCAAGTGTGAGCTGTGCAGCAATTCGTTTGTAACGAAAGCGGAGCTAACCTCGCATGCACGCACCCACTCGGGCATCAAGCCCTATCAGTGCGAAGTGTGCTCCTCGAGATTCACCACCAGCTGCTCCCTTGCCAAGCACAAACGCAAGCATACCGGCGAGCGTCCGTATGCCTGTGACCTGTGCCCCATGCGCTTTACGGCGCTCAACGTGCTGAAGAATCATCGACGGACGCATACCGGGGAACGGCCATTCGTTTGTCCCTTCTGCTCGAAGAGCTTTACACAGCGTGGCGACTGCCAGATGCATCAGCGGACGCATCAGGGCGACAAGATCTACATTTGCCCCGTTTGCAATGAGGAGTTCAAAACGATGAACGAAATGCGAACGCATCTCACGATACACGAGCAGGACGACAAGCGACTAGTGCACTTCACCCTGCTCAGCAACAAGGAGAACGGCAGTGGAACACTGGACGAGGCCGACGAAGATTCGGATGCCACGCAGGATTTACTCTAG
Protein Sequence: MDVEKICRTCLSLSGPFLSIYDGGSGSCLVDMLREFTRTQPRREDNLPARVCLSCISEINHCYSFKLKCESSNRTLRQLLPNALPEPPEFVAKPAVATFEKSMQTNEVQTATAEAQTDGVTTTDATQNTSLQQPALVTVEPPENEEEEEQAEDEEEEEQEFDFEFTEEQEPDEVPSKASAENIILHVEKDNEKYETEMVYNKTTGELLEQNVESVDKQKEYKYRLVSNGNGDTFISPEPASAADPKEPITPETRASSKRRRAAAAAAAVAPQLKEQTDEEPPSAMACKKPNVNFNETPTTEVEELKAKFHCDRCNAGFALEKSLIIHRRQNGCTHRNFKCNECKRVFVSMDHLTEHQATHGTFMCQECGLRSESMEQLGRHMVQTHKRNLRNQCNVCQKVFTMLSTLRDHMRIHTGEKPFVCNVCGKGFTQNANLRQHKMRHSDIKRFKCELCSNSFVTKAELTSHARTHSGIKPYQCEVCSSRFTTSCSLAKHKRKHTGERPYACDLCPMRFTALNVLKNHRRTHTGERPFVCPFCSKSFTQRGDCQMHQRTHQGDKIYICPVCNEEFKTMNEMRTHLTIHEQDDKRLVHFTLLSNKENGSGTLDEADEDSDATQDLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00577199;
90% Identity: iTF_00521551;
80% Identity: -