Dlit006653.1
Basic Information
- Insect
- Drosophila littoralis
- Gene Symbol
- -
- Assembly
- GCA_018903485.1
- Location
- JAEIGF010000612.1:10327723-10335002[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.8e-05 0.0011 19.1 2.1 1 23 239 261 239 261 0.97 2 18 5.8e-06 0.00036 20.6 0.4 1 23 267 289 267 289 0.97 3 18 0.00086 0.054 13.8 0.9 1 23 295 317 295 317 0.95 4 18 1.2e-05 0.00077 19.6 3.1 1 23 323 345 323 345 0.97 5 18 2.8e-05 0.0018 18.5 4.7 1 23 351 373 351 373 0.99 6 18 5.1e-05 0.0032 17.6 5.7 1 23 379 401 379 401 0.97 7 18 2.5e-07 1.6e-05 24.9 4.3 1 23 407 429 407 429 0.98 8 18 9e-08 5.6e-06 26.3 2.4 1 23 435 457 435 457 0.97 9 18 5.2e-05 0.0033 17.6 6.7 1 23 464 486 464 486 0.97 10 18 9.1e-05 0.0057 16.8 6.5 1 23 492 514 492 514 0.98 11 18 8.1e-06 0.00051 20.1 4.5 1 23 520 542 520 542 0.98 12 18 5.9e-06 0.00037 20.6 8.1 1 23 548 570 548 570 0.98 13 18 4.8e-06 0.0003 20.9 7.6 1 23 576 598 576 598 0.97 14 18 5.4e-07 3.4e-05 23.9 7.7 1 23 604 626 604 626 0.98 15 18 0.00017 0.011 16.0 9.5 1 23 632 655 632 655 0.95 16 18 6e-05 0.0037 17.4 0.9 1 23 661 683 661 683 0.98 17 18 0.00065 0.041 14.2 3.4 1 23 693 715 693 715 0.97 18 18 7.4e-06 0.00046 20.3 1.6 1 23 721 744 721 744 0.96
Sequence Information
- Coding Sequence
- ATGCAGCACGTGAGCGCTGCCAGTTCGGCACCTTCGGTGGTTTCAGCACCGGTGGTGACCACTGGCGGTGGCACCACCATCACCTTGGGCGGACCGCCGCCATTGCCCGGCAGCAAGTCAGATCATAAAGAGGACGGCGGCAAGCCGCCACACGGCATTGAAATGTATAAAGTGAACATTGAGGATATATCACAGTTATTTACGTATCACGAGGTCTTTGGCAAAATCCATGGCGATGTGGTGAATCATGTGGCGGCGGTGCATGGCAGCCAGCTGCCACCGCCGCAGCTGCCACCGCCACCGCCACTACCGCCGCAGACGACGCATTCGGCTAGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCACGGTGACCACGACTAGCTCGGCGGGCAGCAACGGGGGGAATGGGGGCAACAACAACAACAACAACTCGACGACAACGACGACGGGTGAGTTGCTAATGCCGAAAATGGAGGGCGGCATTCATGGCGTCGATGGGCAATCGAGCGTTGCGTTGGCGCCGGACGGCACGCCCATAGCGACTGGTACGCATGTGTGCGACATTTGTGGCAAGATGTTCCAGTTTCGCTATCAGCTGATTGTGCACCGTCGCTACCACAGCGAGCGCAAGCCGTTTATGTGTCAGGTATGCGGTCAGGGTTTTACCACATCGCAGGATTTGACCCGGCATGGGAAGATCCACATTGGCGGTCCCATGTTCACTTGCATTGTGTGCTTCAATGTGTTTGCCAATAATACCAGTCTGGAGCGCCATATGAAACGGCATTCAACGGACAAGCCATTCGCCTGCACCATTTGCCAAAAGACTTTCGCACGCAAAGAGCATCTGGACAATCATTTTCGTTCCCATACGGGCGAAACACCGTTCCGTTGTCAGTACTGCGCCAAGACGTTTACGCGCAAGGAGCACATGGTTAATCATGTGCGCAAACACACGGGTGAGACGCCACATCGTTGCGATATTTGTAAGAAGTCCTTCACGCGCAAGGAACACTATGTTAACCACTACATGTGGCACACTGGTCAAACACCGCATCAGTGCGATGTCTGCGGCAAGAAATACACGCGCAAGGAGCACCTAGCCAACCATATGCGCTCCCACACCAACGAGACGCCGTTTCGTTGCGAAATCTGCGGCAAGAGCTTTAGTCGCAAGGAGCATTTCACCAATCACATACTCTGGCATACAGCAGGCGAGACGCCGCATCGGTGCGACTTCTGCTCCAAGACGTTTACGCGCAAGGAGCATTTGTTAAATCACGTGCGCCAGCACACGGGAGAGTCGCCGCATCGCTGCTCCTACTGCATGAAGACGTTTACGCGCAAGGAGCATCTGGTGAACCATATACGCCAGCACACGGGTGAGACACCGTTCAAGTGCACGTACTGCACGAAAGCGTTCACACGCAAAGATCACATGGTTAATCATGTACGGCAACATACAGGCGAATCGCCGCACAAGTGCACATACTGCACCAAGACGTTTACGCGCAAGGAGCACCTCACGAATCATGTGCGACAGCACACGGGCGATTCGCCGCACCGTTGCAGCTACTGCAAGAAGACCTTCACCCGCAAGGAGCATTTGACGAATCATGTACGCCTGCACACTGGAGATTCGCCGCACAAATGCGAATACTGCCAGAAGACGTTCACGCGCAAGGAGCATCTCAATAACCATATGCGCCAGCACTCGAGCGACAATCCCCATTGTTGCAATGTGTGCAACAAGCCCTTCACACGCAAGGAGCACTTGATTAATCACATGTCCCGTTGCCACACCGGCGATCGTCCTTTCACCTGCGAGACGTGCGGTAAATCTTTCCCCCTCAAGGGTAATCTGCTGTTCCATCAGCGCAGCCACACCAAGGGCCAGGAGTGCGAGCGTCCGTTTGCCTGCGAGAAGTGCCCCAAGAATTTCATATGCAAAGGTCACTTGGTCTCGCACATGCGCTCCCATTCGGGCGAGAAACCGCACGCGTGCACACTGTGCAGCAAGGCTTTCGTCGAGCGCGGCAATTTGAAGCGCCACATGAAGATGAATCACCCGGATGCTATGATGCCGCCACCACCCGTGCATCCGCATCCGCAAATACCGGCTGGTGTGCTGACCCAAGTCAAGCAGGAAGTGAAACCGATCATAATTCCCCATCACTCGGCGACGACAACGATGCACACCATTCAGCAGATAACAGCGGGCGCTGCAGCGGCTGGCGCCGGTGCCCATCCAGTGGTTTACTAA
- Protein Sequence
- MQHVSAASSAPSVVSAPVVTTGGGTTITLGGPPPLPGSKSDHKEDGGKPPHGIEMYKVNIEDISQLFTYHEVFGKIHGDVVNHVAAVHGSQLPPPQLPPPPPLPPQTTHSASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATVTTTSSAGSNGGNGGNNNNNNSTTTTTGELLMPKMEGGIHGVDGQSSVALAPDGTPIATGTHVCDICGKMFQFRYQLIVHRRYHSERKPFMCQVCGQGFTTSQDLTRHGKIHIGGPMFTCIVCFNVFANNTSLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDVCGKKYTRKEHLANHMRSHTNETPFRCEICGKSFSRKEHFTNHILWHTAGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGDSPHRCSYCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFTCETCGKSFPLKGNLLFHQRSHTKGQECERPFACEKCPKNFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPDAMMPPPPVHPHPQIPAGVLTQVKQEVKPIIIPHHSATTTMHTIQQITAGAAAAGAGAHPVVY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00560429;
- 90% Identity
- -
- 80% Identity
- -