Dlit001057.1
Basic Information
- Insect
- Drosophila littoralis
- Gene Symbol
- -
- Assembly
- GCA_018903485.1
- Location
- JAEIGF010000408.1:9624221-9625929[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 8.4e-17 1.9e-13 49.7 0.0 2 45 370 413 369 413 0.95 2 3 0.039 87 2.7 0.0 28 37 443 452 442 457 0.90 3 3 9.9e-21 2.2e-17 62.3 0.0 2 42 479 519 478 521 0.96
Sequence Information
- Coding Sequence
- ATGAATCACCTAAAATGGATGGGACACTCGTCCACAATAATGGATATACAGCGCGTTCTGCTGCATCAACAAAGCAACAATCAACAATGCGAGGTATTGCTCGTGGCCAAAGACGGCATCAGTGTGCGCGCCCATCTTTTCGTATTGAGTACGTGCAGCGATCTGATGCGCAACCTGCTTGTCGATTTACCCGCCGGCCAGGAGGCAACTGTCATTCTGCCAGACATTCGTGGTGAGCTGCTCGAGAGCATGTTGTCGTTTATTTACATGGGAGAGACCAGCTTACCCTCCGCCCTGCTCACCGAGTTCCTCGAGGCCATCAATCTATTGGGCATAAAATCTGCCATTAGCTTCGAAACCAACCCCACAGCCATGACCACCTCAAATGTTATAAGCGGCGCTATGGCGGTCGAGGCAGCCAAGTCAATTAGCGGCTTACACATTGCGAATACAGCCCTTATGGAGGAGGAGGAAGAGGAAGATGCCAGTGCGGTGGTCGGTAAACTGGAGGTAGGCAACGCTGTACTAGCAAACCCCCAGCAGCAGCACGAACAGGAAGGCCGAACCTTGGAATTCCTTGATGTGTACGGTGAACAGCCCAAAATAACGTATTCGATTGAGCACATGGGTGGCACAAGCAGCGGGAATCAATATATATTGACAGAGAACACGGGAACATTTACCATAACACAATCAGCATCGTCTGTGGCTAAATTAGGTGTGGCAGGAAGTTCCGCTGTGGTGGACTCTGTGGCGACTGGTGAGCTGGGCGATGATGATGCAGAGGCTGAAAATACGGACGAACAGGACGAATCCGAGTCACAGTTAATTGAGGAGGAGTACGTGGGATCAGGTGATCCATTAATAGAGATGAGCGCAGATGCCGATGTTGATATGCACGAAGATGGAATGCAGGAAGGAGAACCTGGAGACGAAGAGGAAGATGACGAACTGCTGGATGTAAAACCCCGAAAAGTTCATCTTGATATGAATATGTTAAAAACAAAGGCACGCCAACGGCCAATGTCGTCAAAGGTTACAAAAAAGACAATGACAAAACAGTATCAACAACACGCCGCACTTAAAAAAGAAAGCAAGGATGACATCAATGATGCCCTCGATCTGGCAGCAGCTGCTGTACTGCATGAAGGGCTCAGCCTACAAAAGGCTGCCGATCGTTACGACATATCGAAAACCGTACTGTGGCGACGAGTACGCTCCAATCCGGCCTACATGAGAATAAAGCGCGAAAAGCCATCGCTTTCGGAAGCATACGAACGCTTAAAAAACGGCGACTCGTTGAAAAGCATAAGCCAGGATCTGCATATACCCATGTCGACGCTGCATCGACACAAGGTGCGGCTCGCGGCACAAGGACGCCTGCCCGATTTTGTGGCTTGCCGGCGGCGGGATAGCACACCAAAGGATGAGCTGCGCGACAAGCTAGCCAAGGCGGTGCATGCCTGCATAAACGGAGGCATGTCGCAAAATCATGCAGCAAATCTCTTCGAAATACCCAAAAGCACGCTCTGGCGGCACTTGCAGCGCCGCGTGACCGAGGCGGAGCGTAAAGTCAAGGAGGAGCAGGAAGAAGACGAAGACGAGGATGTTCTTAATTAA
- Protein Sequence
- MNHLKWMGHSSTIMDIQRVLLHQQSNNQQCEVLLVAKDGISVRAHLFVLSTCSDLMRNLLVDLPAGQEATVILPDIRGELLESMLSFIYMGETSLPSALLTEFLEAINLLGIKSAISFETNPTAMTTSNVISGAMAVEAAKSISGLHIANTALMEEEEEEDASAVVGKLEVGNAVLANPQQQHEQEGRTLEFLDVYGEQPKITYSIEHMGGTSSGNQYILTENTGTFTITQSASSVAKLGVAGSSAVVDSVATGELGDDDAEAENTDEQDESESQLIEEEYVGSGDPLIEMSADADVDMHEDGMQEGEPGDEEEDDELLDVKPRKVHLDMNMLKTKARQRPMSSKVTKKTMTKQYQQHAALKKESKDDINDALDLAAAAVLHEGLSLQKAADRYDISKTVLWRRVRSNPAYMRIKREKPSLSEAYERLKNGDSLKSISQDLHIPMSTLHRHKVRLAAQGRLPDFVACRRRDSTPKDELRDKLAKAVHACINGGMSQNHAANLFEIPKSTLWRHLQRRVTEAERKVKEEQEEDEDEDVLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00549654;
- 90% Identity
- iTF_00512829;
- 80% Identity
- iTF_00534686;