Basic Information

Insect: Drosophila limbata
Gene Symbol: salm
Assembly: GCA_963924055.1
Location: OZ001353.1:16801253-16808020[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 2.5e-06 0.00025 21.9 1.7 1 23 349 371 349 371 0.98

2 8 3.5e-05 0.0035 18.3 3.5 1 23 377 399 377 399 0.98

3 8 2.4 2.4e+02 3.1 2.5 5 23 643 661 640 661 0.84

4 8 3.6e-08 3.7e-06 27.7 0.2 1 23 667 689 667 689 0.98

5 8 0.0011 0.11 13.6 0.9 1 23 699 721 699 721 0.98

6 8 0.055 5.5 8.3 0.1 2 23 928 950 928 950 0.96

7 8 1.2e-05 0.0012 19.8 5.0 1 23 1092 1114 1092 1114 0.96

8 8 9.4e-08 9.5e-06 26.4 0.7 1 23 1120 1142 1120 1142 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	2.5e-06	0.00025	21.9	1.7	1	23	349	371	349	371	0.98
2	8	3.5e-05	0.0035	18.3	3.5	1	23	377	399	377	399	0.98
3	8	2.4	2.4e+02	3.1	2.5	5	23	643	661	640	661	0.84
4	8	3.6e-08	3.7e-06	27.7	0.2	1	23	667	689	667	689	0.98
5	8	0.0011	0.11	13.6	0.9	1	23	699	721	699	721	0.98
6	8	0.055	5.5	8.3	0.1	2	23	928	950	928	950	0.96
7	8	1.2e-05	0.0012	19.8	5.0	1	23	1092	1114	1092	1114	0.96
8	8	9.4e-08	9.5e-06	26.4	0.7	1	23	1120	1142	1120	1142	0.98

Sequence Information

Coding Sequence: ATGTGTTCAATATTTCGCAATCGAATCAATTACCGGGGCACAGGGACGCGCAGTGGCGCCTCCGGAGGTGGCACGGCCCCAAGCGGCGAGAGGGAAAGTCTGCTGGCCAAGGAACTCAACGCGGATAGCAATAACAATGGCAGTGGAGTGGATGAGGTGCCCCAACTGCACCCCGATGCGGAAGCGGATGCAGATACAGAACTTCAACTGGAAACATCGCTGGAGACATCGGTGGCCGGGAACGCAGAGCAGCAGCCGGAGAACAGCAATGAGGCGTTGGATCTGTCGGTAATCTCCGGCAACCGTTTGCCCACTTCGGGGCATGTGGCACTTGAAGCTTTACAACATACCAAAGTGGCGGTGGCTCAGTTCGCAGCAACTGCGCTGGCGGGGGCAGCTGATCCCAGTGATCTGGCCATGGTGCAGTCGACGATCTTCAATGTGCAGCGACAGCATCtgatgcagctgcagctcATCCAACATTTACAGAGTCAATTGAAGCGGGCTGGAGGCGTGGTCGCTGCTCTCAGCAGGCAAGAGGTTCACAATGAGGAGGAGCTAGACGACTTGGAcgcggaggaggaggaggaaaatCCTGCCAAAGAACTGCCGAGGATAAATGGCGAGACGACAGAGAGCGAGCAGGAGAGTTTAAAGACTGATGGGCAGGACTTGTCCATGGAAAAGGTTAAAGAGTGCAATATGGAAGGCGAACACGAGAAGGAAAGCGAGAGGGACAGAGCGAGGGAGAGGGAGCAAGTCAAGCTGGAGAGCGAGCGGGAGATTGAGGCTGAGGTCGAGCCCGAGACGGAGAGTGACTATCAACCGTTGATGTGCGACATCAGCTCCAGTCTGGCCTCGAGCATTATTACCAACCACGACCCGCCGCCGGCACCGAACGAACCCAACTGCCTGGAGATGCTGCAACGCCGCACGGAGGAGGTGCTGGACTCCGCCTCGCAGAGCCTGCATGCGGCACAGATGCAGGAGGAGTACTCGGAGTATGCCTCGAAGGAGGCACAGAGTCGCGGGGAGATCTTCAAGCACCGTTGCAAGTATTGTGGCAAGATCTTCGGCAGTTACTCGGCCCTGCAGATCCACCTACGATCCCACACCGGCGAGCGACCCTTCCACTGCAACGTCTGTGGCAGCAAGTTCACCACAAAGGGTAACCTTAAGGTCCACTATCAACGGCACACGCAGATCTTTCCACCCATGCTACTGCCCCCTGCAGTCAATGGGGGAGGTCCTCCCGGGGCGAACCCCGAACAGTTTGCCGCTCTCACGCCCATTCGGTTACCATTTGTGCCGCCTGCGCCCCTTGCTCCGCCTCCACCGCCAAGCAGAGATCAGCAGACTGTGGAGCAGCCCCAGCCTCAGCCTCAGCAGCAACCTGCACCGCAGCAGGAGCAACAAGTGCCACAGCAGGCGGAGGATCTGAGCAAGCCCATGCGAGCAAGATCCAACTCGCCCTTGGAACGAGCAATGACACCAACAAAGTCCCAGCCCGATCGGAGTCGACTCGTAACGGAGCCAGCTCAAGCTTCGCCCGAGAAACCTTCGCAAGAGAAGGAAAAGCCCAAGGAGAGTCCGAAGGCGACGACACCAACGACAGCGTCGAGCCGGCGCAACGGCAGCGTGCGGAAACGTCAGACGAGCAACGCCGGAAGTCCTCCCGGGGAGGAACGATCGGTGGAGCATGCCGAGCATCTGCACATTGCCAAGCTGGTGCGTCGCTCCTCGGCCAGTCGGGATGGTTCGGTGGGAATGCCCGGGGCAGGAGAGTACTCGCTTGCCCAGATGGAGCGCATCATAGACAAGTCGTGGGAGGATCTCATAGAGATCGATAAGACGTCGGAGACTTCGAAGCTGCAGCAGCTCGTGGACAACATTGAGAACAAGCTGACGGATCCGAATCAGTGCATCTTCTGCCAGAAGGTCATGTCCTGCCGCAGTTCGCTCCAGATGCACATACGCACCCACACGGGGGAGAGACCCTTTCGCTGCAAGATCTGTGGACGCGCCTTTGCCACCAAGGGCAATCTGAAGGCGCACATGAGCATCCACAAGATCAAGCCGCCTATGCGGAGTCAGTTCAAGTGTCCGGTGTGTCATCAGAAGTTCTCCAACGGCATTATCCTGCAGCAGCACATACGCATTCACACCATGGACGATGGCAGCGGTGGTCCGGGAGGAGTGCAGGGTCAGAGCATCGGAGTTGGCGATGTGGAGCGCTTAGGCATTGAGGATCAGAACTCCAACAAGTCGCTGGGCACCTCGGATACCCTGGACTTCTCCACAACTATTTCCGACCATTCGGGACAGCGCTCGGAGTCCTCGCAGGGAGGTGACTTCGATGAGTTCATGACAATGGACAGCACTGACGATTCGCGGGACAATTCCAGCGCTGCCACAGCCACGCCCTtggacagagagagggagagagacagaagACCTGCCGCCCACGATTTCTGCGATGAACGGTCCAGATCAGATTTGGACTGCGGTGGACGTGAGAGCGCCAGCGGTGGTGAGCTACCACCCATGGATCTCTCATCTCCGTCGTCGGCAGCGGCTGCTGCGCGATTCTTTGGAGTCAGCAATGGTTCGGGAGCGGGAGTAGCTGGAGGTTTGCCCATGCTCGGCATGCCACTACCCCCCAATCTGCTGCTCATGGCGGCGGCGCGAGAGGAGATGCATGCTCTGGGCCAGGCACATGCCAAGTTTCCGTTGCTGCCCTTCGGACCGCTCGGATTTATGGGCCTGCAGCCGCCCCCAAATGTGTGCAACTTGTGCTTCAAGATGCTGCCCAGCCTGGCCGCCTTGGAGAGTCATCTACAGAGCGAGCATGCCAAAGAAGTCACGATTCCATCGGGCCGAGCCCACAACAACGAGGCGGTATCGCCCTACGGAGCCAAGCTCACTCTCAATCCAAATCTGTTTGCAAAGAAACCGAAGCCGACGCAGGAGTTGACGTTGGCGCCGGCCTCGGCCTCGGTGTCGGCGGAGCCAGTTGCGTCAACGGCGGTGCCCATCAAAGAGGAGCCCGAGTCCGAGCAGCTGTCGGCCGAGGAGGCAGCCTGCGAGGGAAGTGGAGCAGCTGCCAGCGGCACCACCAGCTATCCCCAGGAAACCGCAACCGACGCCGAGCAGTCGCTGATGAAGATGCAGCTCCATGCACATCGCTTTCCCGCGAGTCCGCTGGACTTTCAACAGGCTCTGATGTCGGCTGGCCCGCCCTGCTCCAGTCTCGATCCTCCGATAAACAACAAGCACTTTTGCCATGTCTGTCGACGCAacttcagctccagctccgCGTTGCAGATCCACATGAGGACCCACACCGGGGACAAGCCCTTCCAGTGCAATGTTTGCCAGAAGGCCTTTACCACTAAGGGCAACCTCAAGGTTCATATGGGCACTCACATGTGGACGAATCCCACTTCACGTCGTGGACGTCGCATGTCCTTGGAGCTGCCCATGCGACCTGGGCCTGGACCGACTGGACCGCCGACTGCCGAGCAGGAGTTCATGCAGCGTCGACCTGAGCTCTTCTTTCCCTACTTGCCACCCTTTTTCAATGGAATGCCGCCCAAGCCTGGCGAACTGAGTCCTGGCGCCTTCGGCAGCATTCCTCCACCGCATTTTGCCAACGGAGCCAAGTATCCATATCCACCTGGACTGCTGAGCTTTCCAGGCTTTCTAGGTGCTGGTCAGCAGCCTCATCCGTATGCTATGGAGCGACTAGGGGACAGTAAATCTCCCACGTCAGAACCGGCGCAAAGTCCGCCATCGCGGGAGGATGAGGGAAGCTCAGGAGGAAATAATATCTGGCATCCGTTGAGTAGCATTAAAATGGAGAACAATCAAAATGAGAGCACTGGCAATCAGAGCGAATTGGAGCAGGATCAGGAGCAGGACGATAATGACGACGAAGAGGCGGACGTCGATGCCGACGCGGCGGATGCTGAAGAGTCGGAGGCGAGGAGCGGGCCAGAAAAGTAG
Protein Sequence: MCSIFRNRINYRGTGTRSGASGGGTAPSGERESLLAKELNADSNNNGSGVDEVPQLHPDAEADADTELQLETSLETSVAGNAEQQPENSNEALDLSVISGNRLPTSGHVALEALQHTKVAVAQFAATALAGAADPSDLAMVQSTIFNVQRQHLMQLQLIQHLQSQLKRAGGVVAALSRQEVHNEEELDDLDAEEEEENPAKELPRINGETTESEQESLKTDGQDLSMEKVKECNMEGEHEKESERDRAREREQVKLESEREIEAEVEPETESDYQPLMCDISSSLASSIITNHDPPPAPNEPNCLEMLQRRTEEVLDSASQSLHAAQMQEEYSEYASKEAQSRGEIFKHRCKYCGKIFGSYSALQIHLRSHTGERPFHCNVCGSKFTTKGNLKVHYQRHTQIFPPMLLPPAVNGGGPPGANPEQFAALTPIRLPFVPPAPLAPPPPPSRDQQTVEQPQPQPQQQPAPQQEQQVPQQAEDLSKPMRARSNSPLERAMTPTKSQPDRSRLVTEPAQASPEKPSQEKEKPKESPKATTPTTASSRRNGSVRKRQTSNAGSPPGEERSVEHAEHLHIAKLVRRSSASRDGSVGMPGAGEYSLAQMERIIDKSWEDLIEIDKTSETSKLQQLVDNIENKLTDPNQCIFCQKVMSCRSSLQMHIRTHTGERPFRCKICGRAFATKGNLKAHMSIHKIKPPMRSQFKCPVCHQKFSNGIILQQHIRIHTMDDGSGGPGGVQGQSIGVGDVERLGIEDQNSNKSLGTSDTLDFSTTISDHSGQRSESSQGGDFDEFMTMDSTDDSRDNSSAATATPLDRERERDRRPAAHDFCDERSRSDLDCGGRESASGGELPPMDLSSPSSAAAAARFFGVSNGSGAGVAGGLPMLGMPLPPNLLLMAAAREEMHALGQAHAKFPLLPFGPLGFMGLQPPPNVCNLCFKMLPSLAALESHLQSEHAKEVTIPSGRAHNNEAVSPYGAKLTLNPNLFAKKPKPTQELTLAPASASVSAEPVASTAVPIKEEPESEQLSAEEAACEGSGAAASGTTSYPQETATDAEQSLMKMQLHAHRFPASPLDFQQALMSAGPPCSSLDPPINNKHFCHVCRRNFSSSSALQIHMRTHTGDKPFQCNVCQKAFTTKGNLKVHMGTHMWTNPTSRRGRRMSLELPMRPGPGPTGPPTAEQEFMQRRPELFFPYLPPFFNGMPPKPGELSPGAFGSIPPPHFANGAKYPYPPGLLSFPGFLGAGQQPHPYAMERLGDSKSPTSEPAQSPPSREDEGSSGGNNIWHPLSSIKMENNQNESTGNQSELEQDQEQDDNDDEEADVDADAADAEESEARSGPEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00608619;
90% Identity: iTF_00575781;
80% Identity: -