Dleo013479.1
Basic Information
- Insect
- Drosophila leontia
- Gene Symbol
- -
- Assembly
- GCA_008042735.1
- Location
- VNKB01017369.1:6938-8356[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.74 7e+03 -2.7 0.1 36 47 60 70 52 72 0.69 2 3 5.9e-06 0.056 13.6 1.8 22 48 77 103 66 109 0.85 3 3 4.5e-06 0.042 14.0 0.1 22 48 155 181 150 184 0.82
Sequence Information
- Coding Sequence
- atgctgctggccaatataAAATGCAGTGACCGCGACGAGGAGGAGATGCAGATAAGCCCAGGCGACGCCGATCCTCCCTGGATCTACGAGAACTACGAATCTGAGGACGAATTCAAGGAGGCCAACCAAATCCGAATCCTTCGCTGCAGCCTGCCCAGATGCCCGTACAGGACAAACAGGACCCACAACCTGTGGCGGCACGAGGAGAGACACAAGCGCCCAGTGGAACCAAAGCCATTTGGCTGCCCCGTCTGCATCTACAGAACCGATAAAATCAACAACTTGAGGCGTCATGTGGCCATCCGACACCCCAAATCGGCCTCAGTGGCGGAAGATCCGGATGAGCCACCGGTCGCGGCGCCCCGCAGAATCCACTGCCAGGTCCTGGGCTGCCGGTACGAAACGAATCGGGCCTATGACCTAAAGCGCCATATGGCGGTGCACAACAATGTCGAGAAGAGCCACAAGGGGTACAAGTGTTCCCTGTGCATGTACAGCTCGGATAGGAAGGCCAATCTCAAGCGGCACCTGGAGCTGCGGCACTCTGGCATCGAGGACACCATAAAAACTGCAGAAGAGGTAAGGGAGGAGGTACACtgccaggagcagcaacagagTCTGGAAGAGCAGGGGCAGCACGAAGAGCTCTTCAACGATTTGATAGAGGACCTTGACGGGGTGAAGGTCGAAATCGAGGGGAAGAAAACAGAGGTGCAAGTGTacgagcagctggaggaggaggaggaggaaccaCCCCTGATCACGATATCCCCATGGAAGCCACCGGTACTCCATGGAGACATTACCGACAAGCAAGTGATTGCTGTCAACGTAAATGGCCAGCTACGTTGGTTCCAATCAATCGATCCGCCGCCTGGCGCTGTCTCAAAACACCTGCAACTGGccctggaggagcaggaacagcaggCGGCTTCGGCTCAGCAGCAAATGGACGAGCTGGACGACGAGCTGGCCTTGTCCCTGGCCCAGCAGGACcaagaggaggagctgcttGTGGAAATGCTAACCGAAGATCAGCCGTGGAGCTTTCACATTTCCAACGAAATGTTGGCAACTCCCAACCAGGAGGAATCGAAAGACTCTGATTTCCCCAATTGGTGGGACGATGGCGAATACACAAAGATGCACAAAAACCAAACGTTTCGGGATTACCGGCAAAAACCCTCAAAGGCTATAGTGCAACGCATACTGCGCGACATCTATGACATATACTACAAGCCCTTCAAGGAGGAGCGCAGGCAGTCCGAGGTGTTCCAGATCAAGGACTCGTGGCTATGCGCCACCCAGATGACACGAATGCAGATAATTAAAGACATGTACTCGAAGCAGGGCACATAA
- Protein Sequence
- MLLANIKCSDRDEEEMQISPGDADPPWIYENYESEDEFKEANQIRILRCSLPRCPYRTNRTHNLWRHEERHKRPVEPKPFGCPVCIYRTDKINNLRRHVAIRHPKSASVAEDPDEPPVAAPRRIHCQVLGCRYETNRAYDLKRHMAVHNNVEKSHKGYKCSLCMYSSDRKANLKRHLELRHSGIEDTIKTAEEVREEVHCQEQQQSLEEQGQHEELFNDLIEDLDGVKVEIEGKKTEVQVYEQLEEEEEEPPLITISPWKPPVLHGDITDKQVIAVNVNGQLRWFQSIDPPPGAVSKHLQLALEEQEQQAASAQQQMDELDDELALSLAQQDQEEELLVEMLTEDQPWSFHISNEMLATPNQEESKDSDFPNWWDDGEYTKMHKNQTFRDYRQKPSKAIVQRILRDIYDIYYKPFKEERRQSEVFQIKDSWLCATQMTRMQIIKDMYSKQGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -