Dleo018737.1
Basic Information
- Insect
- Drosophila leontia
- Gene Symbol
- -
- Assembly
- GCA_008042735.1
- Location
- VNKB01015050.1:10830-12520[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 4.2e-05 0.0036 17.8 2.7 1 23 89 111 89 111 0.96 2 11 7.9e-08 6.7e-06 26.3 1.7 1 23 117 140 117 140 0.97 3 11 1.3e-05 0.0011 19.3 0.9 1 23 146 168 146 168 0.98 4 11 1.5e-05 0.0013 19.2 0.5 1 23 174 196 174 197 0.95 5 11 1.3e-06 0.00011 22.5 0.9 1 23 204 226 204 226 0.97 6 11 0.0059 0.5 11.0 1.0 1 23 232 255 232 256 0.95 7 11 0.00079 0.068 13.7 0.2 1 23 261 283 261 283 0.98 8 11 1.7e-05 0.0015 19.0 2.7 1 23 289 311 289 311 0.98 9 11 1.6e-05 0.0014 19.1 4.7 1 23 317 339 317 339 0.99 10 11 0.0016 0.13 12.8 0.9 1 23 345 370 345 370 0.95 11 11 0.0031 0.27 11.9 0.2 1 19 376 394 376 396 0.96
Sequence Information
- Coding Sequence
- atggTACGCAGTCGTCGCAGCTTGTCCAAGGAGGATGCCGTATCCCTGCTCACGGACAGTGGCATCTCACTATCCTCGCCGCCGGCAGCACGAGATTCTTCGCCCATTACACCCACCTCCATAAAGAGGCGGAAGAGCAGCTTGGCCAGTCTGCGAGATGCCTGCACCGAAGACGATGAAGATCAGGACACCAAGGACGACGACTATGTGAAGCCACCGCCGAAGAAGTCCCCACGCAAAGTTGAAACAGGAAAGCGAAAGCATCACATTTGCAGCCACTGCTCCAAGGAGTTTGGCGGCAAGACAGATCTACAGCGCCACATGCTCATCCACTCGGACGAAAGGCCACACAAGTGCAAGGACTGCGGGAAGAGCTACCGCCAGGCGGTGAACCTCAAGAACCACATCACCACCGCCCACGAGCACCGAAAACAGTTTTCCTGTTCGCAGTGTCCCAAGTCGTTTGCCCTGAAGGAGCGCCTGCGTCTGCATATGCGACTCCACTCCGGCGAGAAGCCGTATCCGTGTGCTCTGTGTGACAAGAAATTCGCCAGGGGAGGTCAGCTCCAGCAGCACATGGTGTCGCACCACAAGAccagcatccagcagttcAACTGCACCAAGTGCTCGGCCAGCTTTTCGACCAACGCCAATCTGCGGGTTCACATGGAGCGCCACGAACAGGGCATGGAGCACCGGTGCAGCATCTGCGAGAGCCAATTTGCCAATGAGTTAGCCCTGCGAGCCCATATCAACCAGGAGCACCATAAGCTGACCCAATTTGAGTGCGAAATCTGTCACAAGACCATTGAGCCGGACGAGGATCTGGCCACGCACATGCAGAAGCATGCAGCGGTGAAGACGCATGTCTGCGAGGTGTGCAACTCGTACTTTACCCAGAAGAGTCAGTACAATGTCCACATGCGAATGCATACGGGCGAGCGACCCTACCAGTGTCGGATTTGCCATCAGACCTTTGCCCACTCCAGCGTCTTGAAGCTACACATCCGCAAGCACACGGGCGAGAAACCCTTTCGCTGCCAGCTGTGCGAGGATGAGGTGGCCTTCTCCCAGCTGGCGCATCTGAAGAACCACATGAAGAAGATACACAAGCAGCAGAAGCCGTACATGTGCGAGGGCTGCCACGAGTTCTTCAAGATCAAGGTGGAGCTGCAGGCGCATTCGGAGCAGTGTGCCAAGTGTCCCGCGGGCGGGGACGAGGCCAGCGATAACCAATCCGTAGATGCGGCCACCCTCTCCACCATGCGCTTCAATATAGCAGTGGTTTTGAAGAAAATAAGCTCAGCGCAGAAGCTACGCCAGTTGGGTTACGAAAAGCGTCTCATAGACAATGTGATCATTGCATCTTTAAAGTTAGCCCAAAGGCCCACGCATGACGATGCCAAGCTGACGCCCCTGGCCCGGCTCCGTCTGAATGTGGAGGAGTTCCTCAAGTGGATTGTGCCGGCGCCCACAATGAAAAAGTTCAGCGAGGAGCTGCTGTCCATCGACACCATTCTCGACAAGATAGCCACCATGTATATGAAGCAGAAGTAG
- Protein Sequence
- MVRSRRSLSKEDAVSLLTDSGISLSSPPAARDSSPITPTSIKRRKSSLASLRDACTEDDEDQDTKDDDYVKPPPKKSPRKVETGKRKHHICSHCSKEFGGKTDLQRHMLIHSDERPHKCKDCGKSYRQAVNLKNHITTAHEHRKQFSCSQCPKSFALKERLRLHMRLHSGEKPYPCALCDKKFARGGQLQQHMVSHHKTSIQQFNCTKCSASFSTNANLRVHMERHEQGMEHRCSICESQFANELALRAHINQEHHKLTQFECEICHKTIEPDEDLATHMQKHAAVKTHVCEVCNSYFTQKSQYNVHMRMHTGERPYQCRICHQTFAHSSVLKLHIRKHTGEKPFRCQLCEDEVAFSQLAHLKNHMKKIHKQQKPYMCEGCHEFFKIKVELQAHSEQCAKCPAGGDEASDNQSVDAATLSTMRFNIAVVLKKISSAQKLRQLGYEKRLIDNVIIASLKLAQRPTHDDAKLTPLARLRLNVEEFLKWIVPAPTMKKFSEELLSIDTILDKIATMYMKQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00580113;
- 90% Identity
- iTF_00490210;
- 80% Identity
- -