Basic Information

Gene Symbol
ct
Assembly
GCA_035045365.1
Location
JAWNPC010000306.1:2776528-2790270[-]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 4.7e-27 4.9e-23 81.1 0.0 3 72 440 510 438 515 0.95
2 3 4.7e-32 4.8e-28 97.2 0.0 3 77 929 1004 927 1006 0.96
3 3 2.9e-31 3e-27 94.6 0.0 3 76 1197 1271 1195 1274 0.96

Sequence Information

Coding Sequence
ATGCCGCAACAACAAGCCGTAGAcgtagcaacaacagctgtagaagaagatgcagcagcagcagcagcagtagcagcagcagcagccgccgccgcagcagcaacagcagcagttgccaaGCCAGATTTAAGCAAAACTGGAACGAATGAGAATGAGACATTGGCCGAGGCCAATTTGCAGCCGAAAATCGAAATTTTAGACACAGACGAGGTAATAGCCGAggctccagctccagtccAAACGCTAGAAGAGCAGCTGGTCAAAAGCTATTGGAGGCGTGGCTTTGAAACgagcacaacagcagcagcagcagcagcagcaacagcaactgcagtaccagcaacagcagcagcagcagcagctgcagctgcaattgggAGCAAAACGCCAACAATTTATCAAAATGCCAATGTggtgcagcagcaattgttgcccccaccgccaccgccacagcagcagcaccaacaacaacaacaacaacagcaacactatcaacaacaacaacagcaacatcagcagcaacaacaacagcaacaacatggaCCCTCGTCCACTGTGCTGCTCAGTCAATTGGTTAACTCAACTTTCTCACATGCCAATCACTCCTCTTGTTCCAATTCCAAATCCGCACGCCTAGATGCCGCCACACACCATcaactccagcagcagcagcatcagcagcagcaacagccacagctgcagcagcagcaacttctgcacaatagcagcaatagcagcaacagcagcattgcCGGCAGCGATCCACTGAATCATCACCATCATGCGCACCACCATGGCCATGCGCATGGCCAACTGTTGCATACGGCCCACCATTTGCATCATGGCGCCGACTCGAACTCATCCAGCGCCAACAGCACACCGAACAGCACCGCCCAGCTGGCGGCGAGCATTGCCAGCACGCTGAACGGCAACAAGTCGCTGTTGCAGGCAGCGGCCGCTGCCAATGTGgctgctgccgccgttgccgttgccgaggacaacaacaacagtctgACCCCCAATGCGAACGCAGCTGTGGCCGCCGCAGCTATGGCTGCACATGCCCAGCATGCCGCCGTCTTGGGTGCACCCAGCTTTCTGCCCAATCTGCCCAGCCTGCCGGCTTTCCAGTTTGCGGCTGCCGCAGCCGCTGGTCAGGAGGCGCGTGCGCATTTTCGCTTTGCGGACGccgagctgcaactgcagccgGGCGTATCGATGGCGGGTCGATTGGGTGAATCGCTGATACCCAAAGGTGATCCCATGGAGGCCAAGCTGCAAGAGATGCTGCGCTACAATATGGACAAGTATGCCAATCAGGCGCTCGACACGCTGCACATCTCGCGCCGCGTTCGCGAGCTGCTCTCCGTGCACAACATCGGCCAGCGTCTGTTTGCCAAATACATATTGGGCCTGTCGCAGGGCACCGTCTCCGAGCTGCTGAGCAAGCCAAAGCCCTGGGATAAGCTGACAGAGAAGGGTCGCGACAGCTACCGCAAGATGCATGCCTGGGCCTGTGATGATAATGCCGTCATGCTGCTCAAATCCCTCATACCCAAGAAAGaTTCTGGACTGCCTCAGTATGCTGGTCGCGGCGCTGGCGGCGATGATTCCATGTCCGAGGATCGCCTCGCACACATACTCAGCGAAGCCTCCTCCCTGATGAAGAGCAACGTGGTCgccgcccagcagcagcagcagcaacaggagcatCAGCGTCGTCATGCCAGCGATGATACGCACAGCAACGATGACAGCAAATCGCCGCCACAGAGCTGCAGCTCACCCTTCTACAAGGTGGAGCATCAgatcaagcagcaacagcaacagcaacagcagcagcagcagcagcagctgcatgtcTCTGACCATGCGCAGCGGGAGCAACGTGAAGcggctgccgccgccgccgctgttgccgtccatcagcagcagcagcagcgtgagCAGCGCGAACAGCGTGAAGCAGTTCAGcgtgagcaacagcaacgcttGCGTCACGAGGATCTTGCCCAGGACAAGATGGCGCGTCTCTATCAGGAGCTAATGGCGCGCACACCACGCGAAGCAGCCTTCCCTAGcttTTTGTTGTCGCCCTTCTTTAGCGGCGCGGCTGGCATGCCTGGAGCAGCCACCAATCCATTCCCCGCAGCTATGGCCGCCGATGAGAATATGCGTCATGCCTTCGAGCGTGAGATTgtgaagctgcagcagcagcagcaacagcaacagcagcaggcgcaggcCGCCAACTTTCCCAACTTTTCCAGTTTGATGGccctgcagcagcaggtgctAAATGGCGCGCAGGATCTGTCGCTGGCCGGCAAGGATATCAAGCTGAATGGGCAGCGTTCGTCGCACGATCAgcacagcggcagcagcagctccaaggATGGCGAACGCGGCGATGATGGTGATCGCAGCTTTCCCGCCCTGCCACACGCACGCAAATCGGATGGCGGCAACACACCCGCACCACCCGCTCCACCCGTTGTCAATGccgccggcagcagcagcaatccaATTGCCGGCAGCGTCGCTGTTGCCAGCGGCCATGGTAGCAATTCGGCAGCGCCCAGTCCATTGAGCAACTCAATACTGCCGCCAGCGTTGAGCAGCCAGGGCGAGGAGTTTGCTGCAACAGCGAGTCCGTTGCAGCGCATGGCTTCCATAACCAATTCGCTGATCACACAGCCGCCCGTGACACCGCACCACTCGCAGCCACAGCGACCCACTAAGGCGGTGCTGCCGCCCATCACACAGCAGCAGTTCGACATGTTCAACAATCTGAACACCGAGGACATTGTGCGACGCGTCAAGGAGGCGCTCTCCCAGTACAGCATCTCCCAGCGTCTGTTCGGTGAGTCCGTGCTGGGCTTGTCGCAGGGTTCGGTCTCTGATTTGCTAGCCCGCCCCAAGCCCTGGCATATGCTCACCCAGAAGGGCCGTGAGCCGTTCATACGCATGAAAATGTTTCTGGAGGACGAGAATGCGGTGCACAAACTGGTGGCCAGCCAGTACAAGATCGCGCCCGAGAAGCTGATGCGCACGGGCAGCTACAGCGGCAGTCCACAGATGCCCCAAGGCCTGGCCAACAAGATGCAGGCCACGCTGCCCATGCAAAAGATGATGAACGAACTCAAGCTGCAGGAGCCGGCCCAGGCACAGCACATCATGCAACAGAtgcaggcagcggcagccatGTCAGCggccatgcagcagcagcaggcagccgcCGCCCAAGCGGCAGCCGTACagcaggcccaggcccaggcccaggcacAGCAGagccatcagcaacagcaggcacAACAGCAGGCACAACAGCAGgcccaacagctgctgcatcaTCAGAATATGCTATTGACATCGCCCGGCCTGCCGCCCCAGCATGCAATCAGCTTGCCAGCGGCAAGCACGCCCAGCGGCCAGCCTGGCGTTAATCCAGCTGTCGTCGCCACGCCCGGCAGCAACGAGAAGAAGCCGATGATGATGCCGGTGCATGGTGGAGCGCATGCGCCGAATGCCATGCGCAGTCTGCATCAGCATATGTCGCCAACTGTCTATGAGATGGCCGCATTGACACAGGATCTGGACACGCACGATATAACCACCAAGATTAAGGAGGCGCTGCTCGCCAACAACATTGGCCAGAAGATCTTTGGCGAGGCGGTGCTGGGGCTATCGCAGGGCTCCGTATCGGAGCTGCTGAGTAAGCCGAAGCCCTGGCACATGCTCTCCATCAAGGGCCGCGAGCCCTTCATACGCATGCAGCTCTGGCTGAGCGACGCCAACAATGTGGAGCGTCTGCAGCTGCTGAAGAATGAGCGTCGCGAGGCGAGCAAGCGACGTCGCAGCACTGGACCCAATCAACAGGACAACAGCAGCGATACGTCCAGCAATGATACGAACGATTTCTATACGAGCAGCCCCGGTCCCGGCTCGGTGGGCTCATCGGTGGGCGGTGCACCGCCCAGCAAGAAGCAGCGTGTGCTCTTCTCCGAGGAGCAAAAGGAGGCACTGCGTTTGGCCTTTGCCCTGGATCCGTATCCAAATGTGGGCACCATCGAGTTTCTGGCCAACGAGCTGAGTTTGGCCACACGCACCATCACCAACTGGTTCCACAATCATCGCATGCGGCTCAAGCAGCAGGTGCCACACGGCCAGCCCGGCCAGGACAATCCCATACCCAGTCGAGAGAACACCAATGTCACGCCCTTCGATCCCGTCCAGTTTCGCatactgctgcagcagcgtctcGTTGAGCTGCACAAGGAGCGCATGGGCCTGAGTGGTGCGCCCATACCCTACCCACCGTACTTTGCCGCCGCCGCTCTGCTCGGCCGCAGCTTGGCGGGCATTCCAGgcgctgcggcggctgctggtgcagcagcagctgcggccgCTGCTGTCGGCGCCGCTGGCGGCGATGAGCTGCAGGCGCTCAATCAGGCCTTCAAGGAGCAGATGAGCGGACTGGACTTGTCCATGCCGACGCTGAAGCGTGAGCGCAGCGATGACTATCAGGATGAACTGGAGCTGGATGCCAGCGGTCACAATATGAGCGACAACGAGTCCATTGAGGGTGGCCACGAGCCCGAGAACACGCCCATATCCGAGTACGAGAAGGCGCTGCAGAAGTCGGCGCTCGCCTCAGCCGCTGGCTACTTGAACAATGCGGTGCGCAGTTCGCGTCGCAAGCCCGCTGCTCCACAGTGGGTTAATCCGGCAGGTGCCAGTACGCCCACAGCAGCGGGCGCTGCAATCGCAGCCAGCGATAACAGCGGCAACGAGCGCATCATTAACGGCGTCTGCATCATGCAGGCCTCCGACTATGGACGCGATGAGGGCGACAGTGTCAAGGGCGGCGACTCGAATGCCGATGCCGAGCACGATGATCATGCGCACCTGGAGATTGAGCAGCGTTTCATGGAGCCGGAGGTGCGCATCAAGCAGGAGgaggacgatgacgatgagcagtcctcgcagcagcagcaacagcagctggacgATGAGAGTGCCGAGAAGCAGCTGAAGGTGATCAATGAGGAGAAGCTGCGCATGGTGCGTGTGCGACGGCTCAGCAGCAATGGCGATGCCGATGAGCATTGCGCCGCAGTGCAGCAGgcgacggcagcggcagcagcagcagcagcagcagcagcagccgcagccgtagcagcagcagcaactgcgacgccagcaaccgcagcagcagcagcagcgtggaACTACTAA
Protein Sequence
MPQQQAVDVATTAVEEDAAAAAAVAAAAAAAAAATAAVAKPDLSKTGTNENETLAEANLQPKIEILDTDEVIAEAPAPVQTLEEQLVKSYWRRGFETSTTAAAAAAATATAVPATAAAAAAAAAIGSKTPTIYQNANVVQQQLLPPPPPPQQQHQQQQQQQQHYQQQQQQHQQQQQQQQHGPSSTVLLSQLVNSTFSHANHSSCSNSKSARLDAATHHQLQQQQHQQQQQPQLQQQQLLHNSSNSSNSSIAGSDPLNHHHHAHHHGHAHGQLLHTAHHLHHGADSNSSSANSTPNSTAQLAASIASTLNGNKSLLQAAAAANVAAAAVAVAEDNNNSLTPNANAAVAAAAMAAHAQHAAVLGAPSFLPNLPSLPAFQFAAAAAAGQEARAHFRFADAELQLQPGVSMAGRLGESLIPKGDPMEAKLQEMLRYNMDKYANQALDTLHISRRVRELLSVHNIGQRLFAKYILGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWACDDNAVMLLKSLIPKKDSGLPQYAGRGAGGDDSMSEDRLAHILSEASSLMKSNVVAAQQQQQQQEHQRRHASDDTHSNDDSKSPPQSCSSPFYKVEHQIKQQQQQQQQQQQQQLHVSDHAQREQREAAAAAAAVAVHQQQQQREQREQREAVQREQQQRLRHEDLAQDKMARLYQELMARTPREAAFPSFLLSPFFSGAAGMPGAATNPFPAAMAADENMRHAFEREIVKLQQQQQQQQQQAQAANFPNFSSLMALQQQVLNGAQDLSLAGKDIKLNGQRSSHDQHSGSSSSKDGERGDDGDRSFPALPHARKSDGGNTPAPPAPPVVNAAGSSSNPIAGSVAVASGHGSNSAAPSPLSNSILPPALSSQGEEFAATASPLQRMASITNSLITQPPVTPHHSQPQRPTKAVLPPITQQQFDMFNNLNTEDIVRRVKEALSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDENAVHKLVASQYKIAPEKLMRTGSYSGSPQMPQGLANKMQATLPMQKMMNELKLQEPAQAQHIMQQMQAAAAMSAAMQQQQAAAAQAAAVQQAQAQAQAQQSHQQQQAQQQAQQQAQQLLHHQNMLLTSPGLPPQHAISLPAASTPSGQPGVNPAVVATPGSNEKKPMMMPVHGGAHAPNAMRSLHQHMSPTVYEMAALTQDLDTHDITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDANNVERLQLLKNERREASKRRRSTGPNQQDNSSDTSSNDTNDFYTSSPGPGSVGSSVGGAPPSKKQRVLFSEEQKEALRLAFALDPYPNVGTIEFLANELSLATRTITNWFHNHRMRLKQQVPHGQPGQDNPIPSRENTNVTPFDPVQFRILLQQRLVELHKERMGLSGAPIPYPPYFAAAALLGRSLAGIPGAAAAAGAAAAAAAAVGAAGGDELQALNQAFKEQMSGLDLSMPTLKRERSDDYQDELELDASGHNMSDNESIEGGHEPENTPISEYEKALQKSALASAAGYLNNAVRSSRRKPAAPQWVNPAGASTPTAAGAAIAASDNSGNERIINGVCIMQASDYGRDEGDSVKGGDSNADAEHDDHAHLEIEQRFMEPEVRIKQEEDDDDEQSSQQQQQQLDDESAEKQLKVINEEKLRMVRVRRLSSNGDADEHCAAVQQATAAAAAAAAAAAAAAVAAAATATPATAAAAAAWNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00543530;
90% Identity
iTF_00493543;
80% Identity
iTF_00532268;