Dlat009947.1
Basic Information
- Insect
- Drosophila lacteicornis
- Gene Symbol
- -
- Assembly
- GCA_008044355.1
- Location
- VNKF01002534.1:168125-169700[-]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.2e-23 3.3e-20 72.0 19.4 3 69 56 122 54 123 0.96
Sequence Information
- Coding Sequence
- ATGGAGAAGAACATGGCATACGGTCAGGAGCAGCCCAGCCCACAGGCACCGCCTTCGTATGACACCACCCAGCAGATATATCCACAGGTGCCCATGGGTCAGCCAGTGATGGTGGCCCCAGCCCCCATTGTCCAAGCACCTCAGCCCAACATTTTGGGCGGAGTTCCCTGCATGGCCACCTGTCCTAGCTGCGGAGTTCGCCGGCAAACTAATGTCACCTTTCAGCCCAGCACCAAGACCCATTTGCTGGCCCTGCTCATCTGCATGATTGgGGgcatttgttgctgctgcattccATACTGCACCGACTCCTGTCAGTCGGCCAATCACACCTGCAGCGGCTGTGGGGCCTATGTGGGAACCTTCAATAACTAA
- Protein Sequence
- MEKNMAYGQEQPSPQAPPSYDTTQQIYPQVPMGQPVMVAPAPIVQAPQPNILGGVPCMATCPSCGVRRQTNVTFQPSTKTHLLALLICMIGGICCCCIPYCTDSCQSANHTCSGCGAYVGTFNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00480548; iTF_00609543; iTF_00606735; iTF_00590624; iTF_00613857; iTF_00594916; iTF_00594213; iTF_00526247; iTF_00541449; iTF_00478384; iTF_00491889; iTF_00562129; iTF_00489045; iTF_00524789; iTF_00618007; iTF_00485528; iTF_00483341; iTF_00489749; iTF_00533466; iTF_00527709; iTF_00492631; iTF_00490451; iTF_00613176;
- 90% Identity
- iTF_00483341;
- 80% Identity
- -