Dlac001876.1
Basic Information
- Insect
- Drosophila lacicola
- Gene Symbol
- retn
- Assembly
- GCA_035045355.1
- Location
- JAWNPB010000017.1:13222819-13232461[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.2e-26 6.1e-23 81.1 0.0 2 89 20 105 19 105 0.96 2 3 2.3 4.4e+03 -1.8 0.2 21 39 264 287 233 302 0.52 3 3 4.6 8.8e+03 -2.7 0.2 57 81 368 392 365 398 0.63
Sequence Information
- Coding Sequence
- aTGCTCATCTCCGAGGATCAAATACAGGAGCTCTATGAAATCAATGATGATCCCAAGCGCAAGGAGTTTCTCGATGATTTGTTCTCGTTTATGCAAAAGCGCGGCACGCCCATCAATCGGCTGCCCATAATGGCCAAATCGGTGCTGGATCTGTATGAGCTATACAATCTGGTGATAGCCCGCGGCGGCCTTGTCGATGTCATCAACAAGAAGCTCTGGCAGGAGATAATCAAGGGGCTGCATCTGCCGTCGAGCATCACCAGTGCCGCCTTCACGCTGCGCACACAATACATGAAGTATCTGTACCCTTACGAGTGCGAGAAGAAGAACCTGAGCACACCCGCCGAGCTGCAGGCGGCCATTGATGGCAATCGGCGCGAAGGACGCCGCTCCAGCTACGGCCAATACGAGGCCATGCACAATCAGATGCCGCTGACGCCCATTTCGCGACCACCGCTGCCGGGTGGCATGCAACAGATGTCACCCTTGGCGCTGGTCACACACGCCGCAGCGGCCAACAATCAGCAGgcgcaggcagcggcagccgccgcagccgcgcACCGCCGTCTGATGGGCGGCCCGCCATTTGGCCAGATGCCCAATCTGGTCACACAGGAGATTGAGAATCGCATGATGGAGTATCTGCAGCTGATACAGGCCAAGAAGGAGCAGAGCGCGCCAGTGCTGCCACAcaaccatcagcagcagcagcagcagcagcaacagtcgctgcatcatcaccaacaacaacaacaacaacaacaacaacagcagcagcagcggcagcgctcACAAAGTCCCGAGCTGAGCACGCGCGATGCGCTGAGTGCACAGGTGGCGCTTTGGCATATGTACCACAATAGCAGTCCAACCGGTTCGGCGCACACCTCACCACAGCAACGCGAAGCTCTGAACCTCTCGGACTCGCCGCCAACTCTCAATCTGAACCACATAAAACGTGAACGCGAACGCGATCCGACGCCTGAGCCGGCGGATCAGGAGGATGCACCGCATCAGCCGCCTCCGGCGAAACGGGTGGGCAGCGGCCTGATGCCGCCCGGTTTCCCGGCAAACTTTTACTTGAATCCACACAACATGGCCGCCGTAGCTGCCGCCGCGGGCTTCCACCACCAACAggcgaacagcaacagccaccatcagctgcatcagcagcaccagcagctgcagcagcaacagcagcaggatgCCGCGTCCGACGGCGAGCCAGAGGATGACTATGCCAATGCGGAGCACAATACCACAGGCAATTCGTCCTCCTTGCACGACGACAgcgagccgcagcagctgaacgggcaccaccaccaccatctgcatcaccaccaccagcaccaccatcATTCGCATCATCAGAACCATCTGGACAAGTCGGATGACTCGGCCATTGAGAACTCACCCAGCACTTCCACAACTGCGTCGGCTTCGGGCGGCGGCCATCGTCACAGCTCGCCGGTGTCcacaaagaagaagagcagcggcagcaaggcGCAGTCCAGTTCAAAGGACGGCAGCTGCACAGCTGAAgggggcggcggcagcggcagtggcagcagcagcgggggCATAACCGGAGCCGGCGTTAAGCTGAATCCCCTCGAGACACTCAGCCTGCTCTCGGGCATGCAGTTTCAAGTGGCACGCAATGGCACCGGCGCAAACGGCGAACAGCAGCTGATTGTCAATCTGGAGCTGAACGGCATTAAGTACTCGGGTGTGCTGGTGGCCAATGCAGCAGCCGGGCCCGAGCAGAGCGAGCAGCCGGACACAGATGCGGACGCCGAGACGCCCACAGCTGCCGAGGAGCCGGCGCACGACGAGGCCGCCCACGATGCCAGCCAGGAGTGCAGCCAGAACGAGGCAATCgacgaagaggaggaggaggaggaggacgacgagcatacgcagcagcagcagcagcagcatacgGAGGATATTGTGAATGGCAACAGTGCGGTCGGTGTGGGCGcgggtgtgggtgtgagtgtgggcGTTGGGTTGGGCTCGGTGGGCGTGTCCCTGCTAAAAGATGCGGTGGTCAGCTCGTAA
- Protein Sequence
- MLISEDQIQELYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMPLTPISRPPLPGGMQQMSPLALVTHAAAANNQQAQAAAAAAAAHRRLMGGPPFGQMPNLVTQEIENRMMEYLQLIQAKKEQSAPVLPHNHQQQQQQQQQSLHHHQQQQQQQQQQQQQRQRSQSPELSTRDALSAQVALWHMYHNSSPTGSAHTSPQQREALNLSDSPPTLNLNHIKRERERDPTPEPADQEDAPHQPPPAKRVGSGLMPPGFPANFYLNPHNMAAVAAAAGFHHQQANSNSHHQLHQQHQQLQQQQQQDAASDGEPEDDYANAEHNTTGNSSSLHDDSEPQQLNGHHHHHLHHHHQHHHHSHHQNHLDKSDDSAIENSPSTSTTASASGGGHRHSSPVSTKKKSSGSKAQSSSKDGSCTAEGGGGSGSGSSSGGITGAGVKLNPLETLSLLSGMQFQVARNGTGANGEQQLIVNLELNGIKYSGVLVANAAAGPEQSEQPDTDADAETPTAAEEPAHDEAAHDASQECSQNEAIDEEEEEEEDDEHTQQQQQQHTEDIVNGNSAVGVGAGVGVSVGVGLGSVGVSLLKDAVVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00512501;
- 90% Identity
- -
- 80% Identity
- -