Dlac013617.1
Basic Information
- Insect
- Drosophila lacertosa
- Gene Symbol
- -
- Assembly
- GCA_004143845.1
- Location
- SCDZ01000513.1:103538-105145[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.3e-16 6.8e-13 48.3 0.0 2 45 366 409 365 409 0.95 2 3 0.038 1.1e+02 2.8 0.0 28 37 439 448 437 453 0.90 3 3 7.6e-20 2.3e-16 59.4 0.0 2 42 475 515 474 517 0.96
Sequence Information
- Coding Sequence
- ATGGGGCACTCGTCCACAATAATGGACATACAGCGCGTTTTACTGGACCAGCAGAGCAACAATCAACAATGCGAAGTCTTGCTCGTAGCCAAAGACGGCATCAGTGTGCGCGCCCATCTCTTCGTACTGAGCACATGCAGCGATCTGATGCGCAATCTGCTCGTCGATTTACCCGCCGGTCAAGAAGCAACTGTCATTCTGCCTGACATCCGGGGTGAGCTGCTCGAAAGCATGTTGTCGTTTATTTACATGGGCGAGACTAGTCTACCCTCTGCCCTGCTCACCGAGTTTCTGGAAGCCATCAACCTTTTGGGTATTAAGTCAGCCATTAGCTTCGAAACCAATCCCACTGCCGTCACTACATCAAATGTAATAAGCGGCGCTATGGCTGTCGAGGCAGCCAAGTCAATAAGCGGTTTACATATTGCGAATACTGCCCTAATGgaggaggatgaggaggaAGAAGACGCTAGCGCTGTGGTCGGTAAACTGGAGGTGGGAACTGCAGTATTGGCCAATGCACAACATCAGCACGAGCAGGACGGCCGTACGTTAGAGTTCCTCGATATGTACGGTGACCAGCCAAAAATAACGTATTCCATTGAACACATGGGCGGCACAAGCAGTGGCAATCAGTATATATTAACAGAGAACACCGGAACCTTTACCATCACACAATCTGCATCATCTGTGGCCAAATTGGGTGTGTCAGGGAACTCGGGTGTTGTGGATGCTGTGGCAACCGGTGAGCTGGGAGACGATGATGTAGATGCTGATGTTACGGACGAACACGACGAGTCCGAGTCACAGTTAATCGAGGAGGAGTATAATGCATCCGGCGATCCACTAATAGAAATGACAACTGATGGGGATGCGGATGTTGATATGACCGAGGATGGAATGCACGAAGGCGATGACGGGGACGAGGACGATGACGAACTGCTGGATGTCAAACCGCACAAAGTACACCTAGatatgaaaatgttaaaatcaAAGGCACGCCAGCGTTCGCCGTCGTCGAAGACTACAAAAAAGACAATGACgaaacagcatcaacaacacgCCGCACTCAAAAAGGAAATGAAGGACGATATCAATGATGCTCTCGATCTGGCCGCTGCGGCCGTGCTCCACGAAGGGCTCAGTCTTCAAAAGGCTGCCGATCGCTTTGACATATCAAAAACCGTGCTATGGCGACGTGTACGCTCCAATCCAGCGTACATGCGAATAAAACGGGAGAAGCCATCGCTATCAGAGGCATATGAGCGTTTGAGGAGCGGCGACTCGCTGAAGAGCATTAGTCAGGATCTGCACATACCCATGTCGACGCTACATAGGCATAAAGTACGGCTTGCCGCCCAGGGTCGTCTGCCCGACTTCGTTTCCTGCCGGCGGCGGGATAGCACACCGAAAGACGAACTACGCGATAAACTGGCAAAGGCGGTGCATGCCTGCATAAACGAGGGCATGTCCCAAAATCATGCAGCGAATCTCTTCGAAATTCCGAAGAGCACGCTCTGGCGGCATTTACAGCGCCGTGTTACCGAAGCGGAGCGTAAGGTaaaggaggagcaggaggaagatgacgatgatgatgttcATAACtaa
- Protein Sequence
- MGHSSTIMDIQRVLLDQQSNNQQCEVLLVAKDGISVRAHLFVLSTCSDLMRNLLVDLPAGQEATVILPDIRGELLESMLSFIYMGETSLPSALLTEFLEAINLLGIKSAISFETNPTAVTTSNVISGAMAVEAAKSISGLHIANTALMEEDEEEEDASAVVGKLEVGTAVLANAQHQHEQDGRTLEFLDMYGDQPKITYSIEHMGGTSSGNQYILTENTGTFTITQSASSVAKLGVSGNSGVVDAVATGELGDDDVDADVTDEHDESESQLIEEEYNASGDPLIEMTTDGDADVDMTEDGMHEGDDGDEDDDELLDVKPHKVHLDMKMLKSKARQRSPSSKTTKKTMTKQHQQHAALKKEMKDDINDALDLAAAAVLHEGLSLQKAADRFDISKTVLWRRVRSNPAYMRIKREKPSLSEAYERLRSGDSLKSISQDLHIPMSTLHRHKVRLAAQGRLPDFVSCRRRDSTPKDELRDKLAKAVHACINEGMSQNHAANLFEIPKSTLWRHLQRRVTEAERKVKEEQEEDDDDDVHN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00549654;
- 90% Identity
- iTF_00530367;
- 80% Identity
- iTF_00530367;