Basic Information

Gene Symbol
JARID2
Assembly
GCA_018153305.1
Location
JAECXX010000005.1:20631041-20639430[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 2.9e-22 8.3e-19 67.7 0.0 6 89 1821 1902 1816 1902 0.92

Sequence Information

Coding Sequence
ATGGTTGTCTCCAAAGACAACAACAAGCGTCGCCGCAAGGAGACGGAGACGCCTCCACCGCCTACGCCCGCCCCGACCACCGCGGGCCTGGCACCTCCTGCGGCAGTGGCGGCCATCGAGTCCTCCCCCGAAATGCCCAAGAGAACGAAGGTGCAGGCTCAGCGCAAGTTCGCCCAGGGCCAGAGTGCGCCCAGCAGCTCCTCGAGCCTTGCCTACAGCGCAGCAGCAGCGGTAGCTGGATCTGGATCGGGGCCCAGCACCTCCGGAGCGGATAGCTCTCAACCGCCCATCGAGATCCTGCCCAACAAGTGTCCCAAGGCGCAGGACTTCCTCACCTTTCTCTGCTTTCGCGGCACTTCGGCACTGCCCGCCCACTTGGACTTCCTGAACCAGGGCAAGTCCAAGGATTCGGAGTCAACACCGACGGGAGGCAACAACAATAACAATGCAAAAAAGGCCAATAATAGTAGAGCGGGCCTGGGAGGCAACAAAAAGAAGCGGGGACGTCCCGCCAAATTAGCGGCCAAGAAAGTGGAAGGTGTAGTCTCCGTAACGGAGCCCACTCAGAAACCCTCAACAGCAGAAAAAGCAGCTAGTGATAAAAACAATCTCATTGCAGCAATAGTCCCGGAAACTCCTTCGCCAACGCCTACTCCTGTGCTGCCAGGAGCGGTGCGCAAACGAGCGGAAGTTGTCACCGATGGTAATCGACGAGGAGCAAGAGGCAGGGGAGCAGCCGGAGCCGGTGCTACTCCTGACAAGGCAGTGAAAGCAGCATCATCAAAGGACAACAAGCGCCGCTCCAATCGTGCTAGCACTAAGGAAAGCAAACCCATAATAGATGATGACCATTCGGACGATTTGGAGGAACAAGAAGTAGATGAAGATGATGAAGAGTTCTTCTCCGCTCATGATGCCAGCTCGCGTAATGGTGAGGAGGTCAAAGCAGATTGTCCTGTGAAAGCAGAGCCCACTAAGAGAGGTCGACCATCGGCAGGCAAGAAAGCAGCGGAGCCCACACCGGATTCCCAGCCAGCTGCGAAGGACAAAGGGCCCGTGAAGCGCGTTAGGCAACGGGAGTCGCCTATTTTCATACCCTCACCCGAATCCTCTGGCCGCATGACAAGACAGAGGGCTTTTTTCGAGCCCGTTAAGGTTCCGCCGCATCAGGAGGAACCTGCGGACCAGGAGTCGGCAAAGGAAGAGTCCAAAAAGGAACCTGAGTCGCCAGCAAGCAAAACGGAAAAGGAGTCAGAGCCTGCTAAGCAGATCAAAGAAGCCAAGGAGAAGACGAATTCCAGTATTTATGCCAAAGACGCCAAGCAGCAGCTGGAGAATGGAGACAGTCAGCATGGTGCGGGAACCAAGGGCAAGAAAAGTCTAAATGTCTTTGATTTTAGTTCAGATGATGAGCAGCCGCTGGCCAAGTCCATTAAGCTGAAAAAGGGCGGCAAAGGGACAAGCCCCAAGAAAGGTGGAGCGGCAGCTGCTCCGGCGGCCAGGAATCGCAAGGCGGCGGCTAAAAAACTGGAGAAGGAAAAGGAAATAGAAAAAGAAAGGCAGCTGGAAAAAGAAAAGCAGAAGGAAAAGGAACTAGAGATAGAAAAAGAAAAAGAAAAAGAAAAGGAAAAGACCAAGGAAAAAAAGGACAAAGAAAAGGAGAAGGAAAAAGAGCCTGTCCCAGCGAGCAAAGTGGAGGAGCCACCTAGTGGCGGGAAAAGAGGGAAAGCAGGCAAAAAGAAAGCAGAGGATGCTCCAGCCGATGAGCAGGAGTTGGCGCCCCCCTCCTCCAAAAAAGCTGCCACCAATGCCCGCGGATCACGGAAGTCCGCGAAAAGCAAGGCTTCGGAAGACTCCGCTGAGCTAGAACCTCAGCGAACGCAGCGACCCTCCCGTAAAACCAAGGAGGCGGCGGCCATCTACATGGGCATCATTGGCCACAAACTCCAGCTGGCCGATGACGAGGAGGATGACCTGTCGATGAGCAGCTTTCCTGACATACCCAACGTCAAGGAAATGGAGAAGATGGAGAACGAGATCAAACGTAATGCGGCGGGAAAGTTAAACGTGCCGGAGGCCACGACGGTGCTTTCGGCAGGCAAACTAACCCGTAAGCCGTCGCCCCGACCCAAGAATTCGCCAGCCACTGCTCCGGCAGAAGCCACCAGGGATGCGTCCCCCTCCCCACCAGAAGCCGAAGAGGAGAAGCCACCGCCCCCAGCCCGACGTGGACGTCCGCCCAAGCAGGGCAAGGCATCCGCAACCGCTCCACCCCCCAAACCGCCCATCGAGGGCATGCTGGTGAAGAAGGGCTCCCTGGCCAAGATGTCTGAGCAGCAGGCCAAACCCAAAGCCAAGTCCGAACATTCGAAAGTCGACTCCGACGAGGAGGAGGACTTTCTCATTAACGAGGAACTAAACGAAACTAAGCGGAAGCTGGAAAAGAGTTTCAGTGACTCGGACGACGAACCGCTGGCCATTAAAGTGCCGGTAGTGGCGGCCAAAGAGAAAGAAGTATCACCACCGAAGATGCCCAGTCCGCCGCCTAAATTAATGGCGATTCCATCGCCCATTTCTGTGCCCACGCCTTTAATTTCGGTTACTCCTTCGCTGGGGGTGCCCAATACACCACCGGCCACCACTAGCACCACCCAGCTGACCATGCTCCCGTTGACGGCCAAGGCTACGCCAACGCTGGGTACTATGCCCATGTTCCCATGCATGCATGCAAGTTATTCACCGCTCAAAACCATGGAGAAAAAGCCACCGGTGCCCACATCCAAGATCCTGAACGTTCCCGCCACTTATGCGCTGCCGGGAAGTGCCAGTGGTGCCGTGGGCTTCCAGAAGACGTCCTCGTATCTGCCGCAGGCATCGCCCCACTACCATTCGGGCTATGTGCGTCCACCACCCACGCCCACCCATCAGTTTGGAGGCGGAACGCCATCTGGGAGTAAGACTCCTTCCCAGGGCTCCTCGCCGCTAAAGTATCAAACGCCACCGATCACTTATCCGCCACCCATCGAGGCGTATCAGTGTCCAAAGATCAACCCGAACTTTCTGACGCCCAAGTACGAGCGGAGTCCAATGCCGAGATCATCGACCAGCAGCTTTCCAAGCCCATCGCCGGTAAAGTTTCTACCCACATCGGGAACCACAGCTACCACCGTGGGGACACCCTCGTCTGCCACCAAGAGCCCGTTGGCACCACCGCCACCATCCCCTCCAGTCAGTCAAGTGGTCATCCAGACGTCCAGCTTGAATCTGAGTATGAGTATTGCTGCTACAGTGAACGCAGCACCAATGTCCGTGGCCTCCACGTCAGCGGCAGCGGCTCATCAGGCGACTGTTGGCGCCACAATAACAGCCACCTCCACGCCACCGCCAGCGCACAGCAATAGTGCAGGAACTGGAGGAGGAGCCGGCCCAAATTCCGATCCTCTGAAGGACGAGATTGGGAGTATTCTGGCGCAGGCCACGTTGATGCCAAGCAAGGAGGAGTCGGGTAAGATCTTCGGCATTGCCAGCGTGAGTTTGGCGCAGAGTTCTGGGCCGGACAACACCAAGTGCACATTGGGCAAATGTGGATCGATACACAAGCCTGTGCTGGGCCCAGTGGTGCCAACGGAGGGATACTTTGGCGACCAGTTGTCCAGCAAGGAGCGGCGCAAGGCAAAGGTGAACATGACGCACGAACAGATTCAGAAGTGGCTCATTGAATGCTCATCTAATCCGGATGAAATCCAAGACGATTTGGATGATGATTTTGATGACAGTTTAAGACCCCAGCAATCCACTACTCCCCCGCCTACGAGAGATGATAAGGAGCTAAGTGCGAGCTTTAGTTCGTCGTCGAAAAATACGCGCGGCGATCTCGGCAAGAGTGAGAGTGCCTGGTCGGCCAAGGGGCCATCTCTGAAGGCCACGCCAGTTCTGGTCACTCCACCAAGTCGCAAGGAGCAGCAGGAGCACGCGGATGGAAAAGATTGTGATGCCTTGGATTATGACAAATCCTCAACACCTGTGAATCTCACACAGAAGATCACGTCCAATGAGGCTGTCGAAAAGAAAATCAACGATCGGAAGACCAAGGAGTCTGTTAAATCCGCTGCATCCAAAGCTGCTACTCAACCCCGAAGTGCTGCTGCCACGCCTCCCACTCCCATTTCATCCACACCTACTCCGATGTCTCTGACTCCATCTAAGAGCAGTCCCACTCCACCGCCAGCCATCAAGCAAAAACCGGAGAAGGGGAAGAGGAATGCCACTGCTGGTGGCGGCGCAACTTCAATAGCTTCTCCGCCCGCTGCACCCACTCCACCCCATCCCAAGCGAACGCCTGTTTACAATCAAAAGAACGCCAAGGCACAGCAGCAACAGGTGGAGCCCAAATCAGCAGCTAATCCTCAAAGCGGAACAGGAGCCAAAAGAGAATCGGTTTATGCCTTTGGCAAGGAGGAAGAGACGGGCACCAAGTCTGGAAATCGTCGGCGGGCAGATCCTTGTCCAGTTTCTGCCCCAGCCCCCGTCCCCAACGCACTAAGTGAGCGATCTCCAACAAAAAAGCGGGCAGCAGCCGCGGCGGCAGCCACGGCAGTTCAACTAACTCTAAGTCCTACGGAGAACTGCAAGATCGAGGGAAAACCGAAGGCGGCAACTGGAAGAGCAGCTAAAAAGCATCAGCAACAAACTCCTGCTCCACCAGCACCACCCGTGGAAGCCAGTGGAGATTCGGATGCAGAGGGTGCCACCTTCTACATACCCCTTCAAGGAGCCGGAGTAGGTGGCAGCGGTGATGGAGGCATCCAAGGCGTGGCAGTAAAGCTGGGACGAGAGGGACCCGATGGCCCCAATCAGAAGGTGGTGATGCAGGCCACTTTGGTGACAAAAGCACAGATGGACACCAACTCGAAACCTCTGCCGGAGTCGCTAAATACCAACGAGCTCGTGAAGACGCTGCTCCATGCGGCCAGCAATGATGCCGCCTCGACCACCACAAGCCTCAAGAGTTTGCCCAAGGCGAGCACTTCGGCAGCAGCGGGAGCAGGAACTAATCCGGGTGCCTCCAGCTTGGTGCGGGTAAACTCCAACTCGTCACTCTTTTCTGGATCGGCTAAATCTCGAACAGCTGCTCAGACGAGCTCCACGGCGGCTGCAGTGGCCAAGAAGTACAAGGATGACACACCCATTAAGATGGCCAACAATACGGCCTTCCCGCGACACGACGATCCCACACAAATGGTAGAAGCTCCCATCTTCCGGCCGACGGAGAAGGAGTTCGCCGATCCCATCGAGTTCATTGAACGGATCACCCCGATAGCGGCCAGGTTTGGCATCTGCAAGATCATTCCGCCGGCCAGTTTCAAGCCGGAATGTCGGATATCGGACGAGATGCGCTTCACGGCCTACAATCAGTACGTACACAAGATGCTCCACCGTTGGGGACCGAGTGCCAAGGAGCTAAGTGCTATTAAGAAGTACCTGGCCACCCAGAGCATTGTGATGAATCATCCTCCTTGGATCGGTGGAATGGAGGTAGATCTGCCACGATTGTATCATACTGTCCAGGAGCTTGGAGGCCTTAAGGAGGTAATCGAAAAGAAGAAGTGGGCGCGCGTGGCGGAGGAAATGTGCATACCCAAGCTGGCCCAAGATCGGGTGACCAAGCTGGACGACATCTACTGCAAGTACCTGTTGCCCTACGATACGCTGTCGCCGGCGGAGCGCCAGAAGCTCTTTGATGAGGTGGAGGCAGATTGGGCCAAGCGAGAGGCGCGAGCGCGACGGAATGCGGATCGCTTCGTGAACACGGAGAGCGTGTCCAACGAAGAGGATGATCTGAGCAGTGACGAGGACGAAGAGTCCGAGGAGGAGATCGACGGCGTATCCATGGAGTGTATCGTGAAGGGAAGGAGTATGCCCCTCAGTCAGTTCTACAGGATAGCCCGGAACACAATGGCGCTGTGGTTCAAAAGCACCGATCCCACGGTCAACGAAGTGGAAGCGGAGTTTTGGCGCCACGTGGCCGTCCGGGATAGCCATGTGTGCGTCCACTCGGGCTCGATTGATAGCTCGGGCTGGGGCTATGGCTTCCCTAGTCCGGGTCCCAAGGGGAAAGGTTCCAACTATGCCAGGCATCCTTGGAACCTGAAGGTATTGACCAATAATTCTGGTTCTGTTCTGCGCTCCTTGGGTCCGGTCATGGGTGTCACCGTTCCCACTCTCCACGTTGGCATGCTCTTCTCCGCCTGCTGCTGGTACAGGGATCCACACGGCCTGTCTTGGATCGAGTATCTTCACACGGGTGCCTCCAAGCTGTGGTACGGAATTCCCGACGATCAGAGTGCGAATTTCAGGTCGGCCTTGACGTCGCTGATCCCGACGCACTGCCAGAACAAGACCATATGGTTGCCCTGTGATACGGTGATGGTGCCACCGCACATGCTAACGGATCGAGGCGTTTCCCTGTGTCGCATCGAGCAGAAGCCGGGCGAGTTTATTGTGGTATTCCCACGGGCCTACACCTCCAGCCTGGCCACGGGCTATGTGGTCTCCGAGAGCGTTTACTTCGCCACCATGTCATGGCTGGATTTGGCCAAAGATGATTTCAGGGACATCCATGAGAGCTGTGAGCCGGCCATGTTCTCGCTGGAGCAGCTGCTGTTTGCTCTGGGCTATGACCAGCGTGTGAACTCTGATGCTCTGCATCAAATGCTGCCGATGCTCAATGATGTTTGCGAGAAGGAATCGGCAGCCAGAGAGCAACTTAGGGCTGCTGGTGTGACATCCACCGAGAAAGTGCAGGCGGAGAAAGGTCAGAAGGCCAAGAAGCAGCAGCAGCCTCCATACAAGTCCATCGAGAGCGAATGCGACCTGTGCCGCGCCAACCTGTACATATCGATGGTGCGCACCGAGGACGGCAACATTTATTGCCTGCAGCATGCGCTGAAGAACCTCAACAATGGCAACATCCAGGCCAAGCAATGCAAGCTAATCTACGCGTACAACGTGGATGATATACAGCAGCTAATAAGGCAACTACAGGAGAAGATAAGCCACAAGGCGGCGGTAAAGAAAAAGTAG
Protein Sequence
MVVSKDNNKRRRKETETPPPPTPAPTTAGLAPPAAVAAIESSPEMPKRTKVQAQRKFAQGQSAPSSSSSLAYSAAAAVAGSGSGPSTSGADSSQPPIEILPNKCPKAQDFLTFLCFRGTSALPAHLDFLNQGKSKDSESTPTGGNNNNNAKKANNSRAGLGGNKKKRGRPAKLAAKKVEGVVSVTEPTQKPSTAEKAASDKNNLIAAIVPETPSPTPTPVLPGAVRKRAEVVTDGNRRGARGRGAAGAGATPDKAVKAASSKDNKRRSNRASTKESKPIIDDDHSDDLEEQEVDEDDEEFFSAHDASSRNGEEVKADCPVKAEPTKRGRPSAGKKAAEPTPDSQPAAKDKGPVKRVRQRESPIFIPSPESSGRMTRQRAFFEPVKVPPHQEEPADQESAKEESKKEPESPASKTEKESEPAKQIKEAKEKTNSSIYAKDAKQQLENGDSQHGAGTKGKKSLNVFDFSSDDEQPLAKSIKLKKGGKGTSPKKGGAAAAPAARNRKAAAKKLEKEKEIEKERQLEKEKQKEKELEIEKEKEKEKEKTKEKKDKEKEKEKEPVPASKVEEPPSGGKRGKAGKKKAEDAPADEQELAPPSSKKAATNARGSRKSAKSKASEDSAELEPQRTQRPSRKTKEAAAIYMGIIGHKLQLADDEEDDLSMSSFPDIPNVKEMEKMENEIKRNAAGKLNVPEATTVLSAGKLTRKPSPRPKNSPATAPAEATRDASPSPPEAEEEKPPPPARRGRPPKQGKASATAPPPKPPIEGMLVKKGSLAKMSEQQAKPKAKSEHSKVDSDEEEDFLINEELNETKRKLEKSFSDSDDEPLAIKVPVVAAKEKEVSPPKMPSPPPKLMAIPSPISVPTPLISVTPSLGVPNTPPATTSTTQLTMLPLTAKATPTLGTMPMFPCMHASYSPLKTMEKKPPVPTSKILNVPATYALPGSASGAVGFQKTSSYLPQASPHYHSGYVRPPPTPTHQFGGGTPSGSKTPSQGSSPLKYQTPPITYPPPIEAYQCPKINPNFLTPKYERSPMPRSSTSSFPSPSPVKFLPTSGTTATTVGTPSSATKSPLAPPPPSPPVSQVVIQTSSLNLSMSIAATVNAAPMSVASTSAAAAHQATVGATITATSTPPPAHSNSAGTGGGAGPNSDPLKDEIGSILAQATLMPSKEESGKIFGIASVSLAQSSGPDNTKCTLGKCGSIHKPVLGPVVPTEGYFGDQLSSKERRKAKVNMTHEQIQKWLIECSSNPDEIQDDLDDDFDDSLRPQQSTTPPPTRDDKELSASFSSSSKNTRGDLGKSESAWSAKGPSLKATPVLVTPPSRKEQQEHADGKDCDALDYDKSSTPVNLTQKITSNEAVEKKINDRKTKESVKSAASKAATQPRSAAATPPTPISSTPTPMSLTPSKSSPTPPPAIKQKPEKGKRNATAGGGATSIASPPAAPTPPHPKRTPVYNQKNAKAQQQQVEPKSAANPQSGTGAKRESVYAFGKEEETGTKSGNRRRADPCPVSAPAPVPNALSERSPTKKRAAAAAAATAVQLTLSPTENCKIEGKPKAATGRAAKKHQQQTPAPPAPPVEASGDSDAEGATFYIPLQGAGVGGSGDGGIQGVAVKLGREGPDGPNQKVVMQATLVTKAQMDTNSKPLPESLNTNELVKTLLHAASNDAASTTTSLKSLPKASTSAAAGAGTNPGASSLVRVNSNSSLFSGSAKSRTAAQTSSTAAAVAKKYKDDTPIKMANNTAFPRHDDPTQMVEAPIFRPTEKEFADPIEFIERITPIAARFGICKIIPPASFKPECRISDEMRFTAYNQYVHKMLHRWGPSAKELSAIKKYLATQSIVMNHPPWIGGMEVDLPRLYHTVQELGGLKEVIEKKKWARVAEEMCIPKLAQDRVTKLDDIYCKYLLPYDTLSPAERQKLFDEVEADWAKREARARRNADRFVNTESVSNEEDDLSSDEDEESEEEIDGVSMECIVKGRSMPLSQFYRIARNTMALWFKSTDPTVNEVEAEFWRHVAVRDSHVCVHSGSIDSSGWGYGFPSPGPKGKGSNYARHPWNLKVLTNNSGSVLRSLGPVMGVTVPTLHVGMLFSACCWYRDPHGLSWIEYLHTGASKLWYGIPDDQSANFRSALTSLIPTHCQNKTIWLPCDTVMVPPHMLTDRGVSLCRIEQKPGEFIVVFPRAYTSSLATGYVVSESVYFATMSWLDLAKDDFRDIHESCEPAMFSLEQLLFALGYDQRVNSDALHQMLPMLNDVCEKESAAREQLRAAGVTSTEKVQAEKGQKAKKQQQPPYKSIESECDLCRANLYISMVRTEDGNIYCLQHALKNLNNGNIQAKQCKLIYAYNVDDIQQLIRQLQEKISHKAAVKKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00491299;
90% Identity
iTF_00511792;
80% Identity
-