Basic Information

Gene Symbol
JARID2
Assembly
GCA_018153365.1
Location
JAECXW010000155.1:9470460-9478813[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 2.9e-22 8.6e-19 67.7 0.0 6 89 1818 1899 1813 1899 0.92

Sequence Information

Coding Sequence
ATGGTTGTCTCCAAAGACAACAACAAGCGTCGCCGCAAGGAGACAGAGACGCCTCCACCGCCTACACCCGCGCCGCCCACCGCGGGCCTGGCACCTCCTGCGGCAGTGGCGGCCATCGAGTCCTCCCCCGAAATGCCCAAGAGAACGAAGGTGCAGGCTCAGCGCAAGTTCGCCCAGGGCCAGAGTGCGCCCAGCAGCTCCTCGAGCCTTGCCTACAGCGCAGCAGCAGCGGCAGCTGGATCCGGATCGGGGCCCAGCACCTCCGGAGCAGATAGCTCTCAGCCACCCATCGAGATCCTGCCCAACAAGTGTCCCAATGCGCAGGATTTCCTCACCTTTCTCTGCTTTCGCGGCACTCCGGCACTGCCCGCCCACTTGGATTTCCTGAACCAGGGCAAGTCCAAGGGTTCGGAGTCCACAACGTCAGGAGGCAACAATAATAACAATGCAAAAAAGGCCAATAATAGTAGAGCGGGCCTGGGAGGCAACAAAAAGAAGCGGGGACGTCCCGCCAAAGTAGCGGCGAAAAAACTGGAAGCGGTAGTCTCCGTAACGGAGCCCACTGAGAAACCCTCAACAGCAGAAAAAGCAGCCAGTGATAAAAACAATCTCATTGCAGCAATAGTCCCGGAAACTCCTTCGCCAACGCCTACTCCTGTGCTGCCAGGAGCGGTGCGCAAACGAGCGGAGGTTGTCACCGATGGTAATCGACGCGGAGCACGAGGCAGGGGAGCAGCCGGAGCTGGTGCTACTCCTGACAAGGCAGTAAAAGCAGCATCTTCTAACGACAACAAGCGCCGCTCCAATCGTGCTAGCACTAAGGAAAGCAAACCCATAATAGATGATGACCATTCGGAAGATTTGGAGGAACATGAAGCAGATGAAGATGATGAAGAGTTCTTCTCCGCTCATGATGCCAGCTCGCGTAATGGTGATGAGGTCAAAACAGATAGTCCTGTGAAAGCAGAGCCTACTAAGCGAGGTCGACCGTCGGCGGGAAAGAAAGCAGCGGAGCCCACACCGGAATCCCAGCCAGCTGCGAAGGACAAGGGGCCCGTGAAGCGCGTTAGGCAACGGGAGTCGCCTATTTTCATACCCTCACCCGAGTCCTCTGGCCGCATGACAAGACAGCGGGCTTTTTTTGAGCCCGTTAAGGTTCCGCCGCATCAGGAGGAACCTGTGGACCAGGAGTCGGCAAAAAGACCTGAGTCGCCAGCAAGCAAACCGGAAAAAGAGTCAGAGCCTGCTAAGCAGATCAAAGAAGCCAAGGAGAAGACGAATTCCAGTATTTATGCCAAAGACGCCAAGCAGCAGCTGGAGAATGGAGACAGTCAGCATGGTGCGGGAACCAAGGGCAAGAAAAGTCTAAATGTCTTTGATTTTAGTTCAGATGATGAGCAGCCGCTGGCCAAGTCCATTAAGCTGAAAAAGGGCGGCAAAGGGACAAGCCCTAAGAAAGGTGGAGCGGCAGCTACTCCGGCGGCCAGGAATCGCAAGGCGGCAGCTAAAAAACTGGAGAAGGAAAAAGAAATAGAAAAAGAAAAAGAAAGGCAGCTGGAAAAAGAAAAGCAGAAGGAAAGGGAACTAGAGATAGAAAAAGAAAAGGAAAAGGAAAAGAGCAAGGAAAAAAAGGACAAAGAAAAGGAGAAAGAAAAAGAGCCTGTCCCAGAGAGCAAAGTGGAGGAGCCACCTAGTGGCGGGAAAAGAGGGAAAGCAGGCAAAAAGAAAGCAGAGGATGCTCCAGCCGATGAGCAGGAGTTGGCGCCCCCCTCCTCAAAAAAAGCCGCTACCAATGCCCGCGGATCACGGAAGTCTGCGAAAAGCAAGGCTTCGGAAGACTCCGCTGAGCTAGAACCTCAGCGAACTCAGCGACCCTCACGTAAAACCAAGGAGGCAGCGGCCATCTACATGGGCATCATTGGCCACAAACTGCAGCTGGCCGATGACGAGGAGGATGATCTGTCGATGAGCAGCTTTCCTGACATACCCAACGTCAAGGAAATGGAGAAAATGGAGAACGAGATAAAACGTAATGCGGCGGGAAAGTTAAACGTGCCGGAGGCCACGACGGTGCTTTCGGCAGGCAAACTAACCCGTAAGCCGTCGCCCCGACCCAAGAATTCTCCAGCCCCTGCTCCGGCAGAAGCCACCAGGGATGCGTCCCCCTCCCCGCCAGAAGACGAGGAGGAAAAGCCACCGCCCCCAGCCCGACGTGGACGTCCACCCAAGCAAAGCAAGGCATCCGCAACCGCTCCACCCCCCAAACCGCCCATCGAGGGCATGCTGGTAAAGAAAGGTTCCCTGGCCAAGATGTCTGAGCAGCAGGCCAAACCAAAAGCCAAGTCCGAACATTCGAAAGTCGACTCCGACGAGGAGGAGGATTTTCTCATTAACGAGGAACTAAACGAAACTAAGCGAAAGCTGGAAAAGAGTTTCAGTGACTCGGATGACGAACCGCTGGCCATTAAAGTGCCGATAGTGGCGGCTAAGGAGAAAGAAGTATCGCCACCAAAGATGCCCAGTCCGCCGCCAAAATTAATGGCGATCCCATCGCCCATTTCTGTGCCCACGCCTTTAATTTCGGTTACTCCTTCGCTGGCGGTGCCCAATACGCCACCGGCCACCACTAGCACCACCCAGCTGACCATGCTCCCGTTGACGGCAAAGGCTACGCCAACGCTGGGTACTATGCCCATGTTTCCATGCATGCATGCAAGTTATTCACCGCTCAAAACCATGGAGAAGAAACCGCCGGTGCCCACGTCCAAGATCCTGAACGTTCCCGCCACTTATGCGCTGCCGGGAAGTGCCAGTGGTGCCGTGAGCTTCCAGAAGACGTCCTCGTATCTGCCGCAGGCATCGCCCCACTACCATTCGGGCTACGTACGTCCACCACCCACGCCCACCCATCAGTTTGGAGGCGGAACGCCTTCTGGGAGTAAGACTCCCTCCCAGGGCTCCTCGCCGCTAAAATATCAAACGCCACCGACCACTTATCCGCCACCCATCGAGGCGTATCAGTGTCCCAAGATCAACCCGAACTTTCTGACGCCCAAGTACGAGCGGAGTCCAATGCCGAGATCATCGACCAGCAGCTTTCCAAGCCCATCGCCGGTAAAGTTTCTACCCACATCGGGAACCACAGCTACCACCGTGGGCACACCCTCGTCTGCCACCAAGAGCCCGTTAGCACCACCGCCACCATCCCCTCCAGTCAGTCAAGTGGTCATCCAGACGTCCAGCTTGAATCTGAGTATGAGTATTGCTGCTACAGTGAACGCAGCACCAATGTCCGTGGCCTCCACGTCAGCGGCAGCGGCTCATCAGGCGACTGTTGGCGTCACAATAACATCCACCTCCACGCCACCGCCCGCGCACAGCAATAGTGCCGGAACTGGAGGAGGAGCCGGACCAAATTCCGATCCTCTGAAGGACGAGATTGGGAGTATTCTGGCGCAGGCCACGTTGATGCCAAGCAAGGAGGAGTCGGGCAAGATCTTCGGCATTGCTAGCGTGAGTTTGGCGCAGAGTTCTGGGCCGGACAACACCAAGTGCACACTGGGCAAGTGTGGATCGATACACAAGCCTGTGCTGGGCCCAGTGGTGCCAACGGAGGGATACTTTGGCGACCAGTTGTCTAGCAAGGAGCGGCGCAAAGCAAAGGTGAACATGACGCACGAACAGATTCAGAAGTGGCTCATTGAATGCTCATCTAATCCGGATGAAATCCAAGATGATTTGGATGATGATTTTGATGACAGTTTAAGACCCCAGCAATCCACTACTCCGCCGCCTACGAGAGATGATAAGGAGCTAAGTGCGAGCTTCAGTTCGTCGTCGAAAAATACGCGCGGCGATCTCGGCAAGAGTGAGAGTGCCTGGTCGGCCAAGGGGCCATCTCTAAAGGCCACGCCAGTTCTGGTCACTCCACCAAGTCGCAAGGAACAGCAGGAGCACGCGGATGGAAAAGATTGTGATGCCTTGGATTATGACAAATCCTCAACACCTGTGAATCTCACACAGAAGATCACGTCCAATGAGTCAACGGCTGTCGAAAAGAAAATCAACGATCGTAAGACTAAGGAGTCGGTTAAATCCGCTGCATCCAAAGCTGCTCCTCAACCCCGAAGTGCTGCTGCCACGCCTCCCACTCCCATTTCATCCACACCTACTCCGATGTCTTTGACTCCATCTAAAAGCAGCCCCACTCCACCGCCAGCTATCAAGCAAAAACCGGAGAAGGGGAAGAGGAATGCCACTGCTGGTGGCGGCGCAACTTCAATAGCTTCTCCGCCCGCTGCACCCACTCCACCCAATCCTAAGCGAACGCCTGTTTACAATCAAAAGAACGCCAAAGCACAGCAGCAACAGGCGGAGCCCAAATCGGCAGCTATTCCTCCGAGCGGAACAGGAGCCAAAAGAGAATCGGTTTATGCCTTTGGCAAGGAAGAAGAGACGGTCACCAAGTCTGGAAATCGTCGACGGGCGGATCCTAGTCCAGTTTCTGTCCCAGCTCCCGTTTCCAACGCACTGAGTGAGCGATCTCCAACCAAAAAGCGGGCAGCAGCCGCGGCGGCAGCCACGGCGGTTCAACTAACGCTAAGTCCTACGGAGAACTGCAAGATCGAGGGAAAACCGAAGGCGACATCTGGAAGAGCAGCTAAAAAGCAACAGCAACAAACTCCTGCTCCACCAGCAGCACCCGTGGAAGCCAGTGGTGATTCGGATGCAGAGGGCGCCACCTTCTACATACCCCTTCAAGGAGCCGGAGTAGGTGGCAGCGGTGATGGGGGCATCCAAGGTGTGGCAGTAAAGCTGGGTCGAGAGGGACCCGATGGCCCCAATCAGAAGGTGGTGATGCAGGCCACTTTAGTGACAAAAGCACAGATGGACACCAATTCAAAACCACTGCCGGAGTCCCTGAATACCAACGAGCTGGTAAAGACCCTGCTCCATGCGGCCAGCAATGATGCGGCCTCGACCACCACAAGCCTTAAAAGCTTGCCCAAGGCGAGCACTTCGGCAGCAGCAGGAGCAGGAACTAATCCTGGTGCCTCCAGCTTGGTGCGTGTGAACTCCAATTCGTCGCTCTTCTCCGGTTCGGCTAAATCTCGTACAGCTGCCCAGACGAGCTCCACGGCGGCTGCAGTGGCCAAGAAGTACAAGGATGACACACCCATTAAGATGGCCAACAATACGGCCTTCCCGCGACACGACGATCCCACACAAATGGTGGAAGCGCCCATCTTTCGGCCAACTGAGAAGGAGTTCGCCGATCCCATCGAGTTCATTGAACGGATCACCCCGATAGCGGCCAGGTTTGGCATCTGCAAGATCATTCCGCCGGCTAGTTTTAAGCCGGAATGTCGGATATCGGACGAGATGCGTTTCACGGCATACAATCAGTACGTGCACAAAATGCTCCACCGCTGGGGACCGAGTGCCAAGGAGCTAAGTGCTATTAAGAAGTACCTGGCCACCCAGAGCATTGTGATGAATCATCCTCCTTGGATCGGTGGAATGGAGGTGGATCTGCCACGATTGTATCATACTGTCCAGGAGCTTGGAGGCCTCAAGGAGGTAATTGAAAAGAAGAAGTGGGCGCGCGTGGCGGAGGAAATGTGCATACCCAAGCTGGCCCAAGATCGGGTGACCAAGCTAGACGACATCTACTGCAAGTACCTGTTGCCCTACGATACGCTGTCGCCGGCAGAGCGCCAGAAGCTGTTTGATGAGGTGGAAGCGGATTGGGCCAAGCGGGAGGCGCGAGCGCGACGGAATGCAGATCGCTTCGTCAACACGGAGAGCGTGTCCAACGAAGAGGATGATCTGAGCAGTGACGAGGACGAAGAGTCCGAAGAGGAGATCGACGGCGTGTCCATGGAGTGTATCGTGAAGGGAAGGAGTATGCCCCTCAGTCAGTTCTACAGGATTGCCCGGAACACGATGGCGCTGTGGTTCAAAAGCACCGATCCCACGGTCAACGAAGTGGAAGCGGAGTTTTGGCGACACGTGGCCGTCCGGGATAGCCATGTGTGCGTCCACTCTGGCTCGATTGATAGCTCGGGCTGGGGCTATGGCTTCCCTAGTCCGGGTCCCAAGGGGAAAGGTTCCAACTATGCCAGGCATCCGTGGAATCTAAAGGTATTGACCAATAATTCTGGTTCTGTTCTGCGCTCCTTGGGTCCGGTCATGGGCGTCACCGTTCCCACTCTCCACGTTGGCATGCTCTTCTCCGCCTGCTGCTGGTACAGGGATCCACACGGCCTGTCTTGGATCGAATACCTTCACACAGGTGCCTCCAAGCTGTGGTACGGAATTCCCGACGATCAGAGTGCGAATTTCAGGTCGGCCTTGACGTCTCTGATCCCGACGCACTGCCAGAACAAGACCATATGGTTGCCCTGTGATACGGTGATGGTGCCACCGCACATGCTAACGGATCGAGGCGTTTCTCTGTGTCGCATCGAGCAGAAGCCGGGCGAGTTTATTGTGGTATTCCCACGAGCCTACACCTCCAGCCTGGCCACGGGCTATGTGGTCTCCGAGAGCGTTTACTTCGCCACCATGTCATGGCTGGATTTGGCCAAAGATGATTTCAGGGACATCCATGAGAGCTGTGAGCCGGCCATGTTCTCGCTGGAGCAGCTGTTGTTTGCTCTGGGCTACGACCAGCGTGTGAACTCTGATGCTCTCCATCAAATGCTACCAATGCTCAATGATGTTTGCGAGAAGGAATCGGCAGCCAGAGAGCAACTTAGGGCTGCTGGTGTGACATCCACCGAGAAAGTGCAGGCGGAGAAAGGTCAGAAGGCCAAAAAGCAGCAGCAGCCTCCATACAAGTCCATCGAGAGCGAATGCGACCTGTGCCGCGCCAACCTTTACATATCGATGGTGCGCACCGAGGACGGTAACATTTATTGTCTGCAGCATGCGCTGAAGAACCTCAACAACGGCAACATCCAGGCCAAGCAATGCAAGTTAATCTACGCGTACAACGTGGATGATATACAACAGCTAATAAGGCAACTACAGGAGAAGATTAGCCACAAGGCGGCAGTAAAGAAAAAGTAG
Protein Sequence
MVVSKDNNKRRRKETETPPPPTPAPPTAGLAPPAAVAAIESSPEMPKRTKVQAQRKFAQGQSAPSSSSSLAYSAAAAAAGSGSGPSTSGADSSQPPIEILPNKCPNAQDFLTFLCFRGTPALPAHLDFLNQGKSKGSESTTSGGNNNNNAKKANNSRAGLGGNKKKRGRPAKVAAKKLEAVVSVTEPTEKPSTAEKAASDKNNLIAAIVPETPSPTPTPVLPGAVRKRAEVVTDGNRRGARGRGAAGAGATPDKAVKAASSNDNKRRSNRASTKESKPIIDDDHSEDLEEHEADEDDEEFFSAHDASSRNGDEVKTDSPVKAEPTKRGRPSAGKKAAEPTPESQPAAKDKGPVKRVRQRESPIFIPSPESSGRMTRQRAFFEPVKVPPHQEEPVDQESAKRPESPASKPEKESEPAKQIKEAKEKTNSSIYAKDAKQQLENGDSQHGAGTKGKKSLNVFDFSSDDEQPLAKSIKLKKGGKGTSPKKGGAAATPAARNRKAAAKKLEKEKEIEKEKERQLEKEKQKERELEIEKEKEKEKSKEKKDKEKEKEKEPVPESKVEEPPSGGKRGKAGKKKAEDAPADEQELAPPSSKKAATNARGSRKSAKSKASEDSAELEPQRTQRPSRKTKEAAAIYMGIIGHKLQLADDEEDDLSMSSFPDIPNVKEMEKMENEIKRNAAGKLNVPEATTVLSAGKLTRKPSPRPKNSPAPAPAEATRDASPSPPEDEEEKPPPPARRGRPPKQSKASATAPPPKPPIEGMLVKKGSLAKMSEQQAKPKAKSEHSKVDSDEEEDFLINEELNETKRKLEKSFSDSDDEPLAIKVPIVAAKEKEVSPPKMPSPPPKLMAIPSPISVPTPLISVTPSLAVPNTPPATTSTTQLTMLPLTAKATPTLGTMPMFPCMHASYSPLKTMEKKPPVPTSKILNVPATYALPGSASGAVSFQKTSSYLPQASPHYHSGYVRPPPTPTHQFGGGTPSGSKTPSQGSSPLKYQTPPTTYPPPIEAYQCPKINPNFLTPKYERSPMPRSSTSSFPSPSPVKFLPTSGTTATTVGTPSSATKSPLAPPPPSPPVSQVVIQTSSLNLSMSIAATVNAAPMSVASTSAAAAHQATVGVTITSTSTPPPAHSNSAGTGGGAGPNSDPLKDEIGSILAQATLMPSKEESGKIFGIASVSLAQSSGPDNTKCTLGKCGSIHKPVLGPVVPTEGYFGDQLSSKERRKAKVNMTHEQIQKWLIECSSNPDEIQDDLDDDFDDSLRPQQSTTPPPTRDDKELSASFSSSSKNTRGDLGKSESAWSAKGPSLKATPVLVTPPSRKEQQEHADGKDCDALDYDKSSTPVNLTQKITSNESTAVEKKINDRKTKESVKSAASKAAPQPRSAAATPPTPISSTPTPMSLTPSKSSPTPPPAIKQKPEKGKRNATAGGGATSIASPPAAPTPPNPKRTPVYNQKNAKAQQQQAEPKSAAIPPSGTGAKRESVYAFGKEEETVTKSGNRRRADPSPVSVPAPVSNALSERSPTKKRAAAAAAATAVQLTLSPTENCKIEGKPKATSGRAAKKQQQQTPAPPAAPVEASGDSDAEGATFYIPLQGAGVGGSGDGGIQGVAVKLGREGPDGPNQKVVMQATLVTKAQMDTNSKPLPESLNTNELVKTLLHAASNDAASTTTSLKSLPKASTSAAAGAGTNPGASSLVRVNSNSSLFSGSAKSRTAAQTSSTAAAVAKKYKDDTPIKMANNTAFPRHDDPTQMVEAPIFRPTEKEFADPIEFIERITPIAARFGICKIIPPASFKPECRISDEMRFTAYNQYVHKMLHRWGPSAKELSAIKKYLATQSIVMNHPPWIGGMEVDLPRLYHTVQELGGLKEVIEKKKWARVAEEMCIPKLAQDRVTKLDDIYCKYLLPYDTLSPAERQKLFDEVEADWAKREARARRNADRFVNTESVSNEEDDLSSDEDEESEEEIDGVSMECIVKGRSMPLSQFYRIARNTMALWFKSTDPTVNEVEAEFWRHVAVRDSHVCVHSGSIDSSGWGYGFPSPGPKGKGSNYARHPWNLKVLTNNSGSVLRSLGPVMGVTVPTLHVGMLFSACCWYRDPHGLSWIEYLHTGASKLWYGIPDDQSANFRSALTSLIPTHCQNKTIWLPCDTVMVPPHMLTDRGVSLCRIEQKPGEFIVVFPRAYTSSLATGYVVSESVYFATMSWLDLAKDDFRDIHESCEPAMFSLEQLLFALGYDQRVNSDALHQMLPMLNDVCEKESAAREQLRAAGVTSTEKVQAEKGQKAKKQQQPPYKSIESECDLCRANLYISMVRTEDGNIYCLQHALKNLNNGNIQAKQCKLIYAYNVDDIQQLIRQLQEKISHKAAVKKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00491299;
80% Identity
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