Basic Information

Gene Symbol
stc
Assembly
GCA_035042145.1
Location
JAWNLT010000262.1:8473431-8477062[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 1.4 1.2e+04 -3.6 0.5 15 18 344 347 343 348 0.79
2 15 2 1.7e+04 -4.1 1.6 15 19 371 375 370 375 0.81
3 15 0.015 1.3e+02 2.7 2.5 4 11 404 411 403 412 0.91
4 15 5.7e-07 0.005 16.8 15.1 1 19 416 433 416 433 0.93
5 15 2.4e-08 0.00021 21.2 11.4 1 18 469 486 469 487 0.96
6 15 2 1.8e+04 -6.2 3.9 7 13 491 497 491 498 0.74
7 15 3.4e-09 3e-05 23.9 13.6 1 19 527 545 527 545 0.98
8 15 1.1 9.7e+03 -3.3 0.5 5 10 575 580 575 580 0.90
9 15 2.3e-05 0.2 11.7 17.0 4 19 593 608 586 608 0.88
10 15 0.057 5e+02 0.8 11.6 1 11 648 658 648 670 0.79
11 15 4.7e-10 4.1e-06 26.7 15.5 1 18 675 692 675 693 0.97
12 15 0.3 2.6e+03 -1.5 0.8 5 10 721 726 719 726 0.94
13 15 2 1.8e+04 -4.9 8.8 9 18 739 749 729 750 0.81
14 15 2.7e-08 0.00023 21.1 12.6 1 16 786 801 786 809 0.95
15 15 4.7e-07 0.0041 17.1 12.4 1 19 819 838 819 838 0.96

Sequence Information

Coding Sequence
ATGGCCGAAtattggcaacagcagcagcagacgccgccaacgcagcaacagcagctaacaAATGGAGCAGTAGCTCCTAATGAATCAGTCGCCGCTGCCTCCaacgctgccgctgcctccGTTGCTGCCTGCAATGggcagagcaacaacaacaacaattatgttAACTTCAATCAGTTCATTACGCAGCATAATTTACACAGCTCCAATCTCGGCTACAGCAGTGGCGGCGCCTTTGGCCTGACGCCCGCCAGTTGCAGCGGCAGCACTGCCAACAACTCGTCCAGCTTTGGCGTCGGCCAATATGCGGCGCCTGTTTTTGGCTATCAGAATGGCGATGGCGCTGGCCAACATTATCCCAATTTGTACTCAGCCTTTGGCAATAATCCatttgctgctcctgctgccggCGGCACCGCTTTCGATTTTAGCGCTTCCAAGCTGCAGGCAACGGCGCCCGAATTTGTGCCCAACTTCGCCAAGCTCAGCCTGACGACGAGcaaagccaacagcagcagcaccaatggcaataataatattaatatcaacaacagcaacactgcCACAACACAGCACACGTCACAtgaggcagccagcagcaatgCTCAACGGGGCTTAGCGAAGCCTGTGGCTGGCGGCAATAATactcggcagcagcagcggcgccagGACTATCGCGAGGATCGCCATGAGGATCGGTATGAGCGTGGCAAGAAGccgcagaagcagcagcgctACGACAATCATCGCAGCAACAAAAGACGAGATGACTGGAATCGCAATCGTGACCGCATCAATGGCTATTCACGCGCCGCCGACGAGCTGGacaccagcaacagtaacGACAGCGCCCAGCCCTCGCCCGAGAAGCAGCCCGAGAAGCAGCTGCCACACCAAGTCTCCCCTCGCCGTGCGCCCGACAACGAGAAGCTGTCGCAGCGGGAGAAGCTGATGCGCGATATCGAGCAGCGACGCCTGGAGTGCTTGGTGTGCGTAGAGCAGATCAAGGCGCATCATGGCACGTGGTCGTGCCAGAATTGCTATCATGTGCTGCATCTCAAGTGCACCATCACCTGGGCGAGCAGTTCCAAGTCGGCTGAGGGCTGGCGCTGCCCAGCCTGCCAGAATGTGCTGCAAGAGTTGCCGCGCGATTATCTCTGCTTCTGTGGCAAGCTAAAGAATCCGCCACTCACACGCAACGAGCTGGCGCACACTTGCGGCGAACTCTGCTGCCGCATTGAGGGCTGCAGTCATGCGTGCACCCTGCTTTGTCATCCGGGTCCGTGCCCGCCGTGCCAGGCGAACGTGTTGCGCGGCTGTGGCTGCGGACGCACCTCCAAGATGATGCAGTGCGCCatgaagcagcaactgcagtgCGAGGCCGCCTGCGACAAGCCACTCAACTGCGCCGAGCATCGTTGCCAGCAGTTGTGCCATGCGGGCAAATGTGAGCCGTGTGCGGAGCAGGTGGAGCAACACTGCcattgtggcaagcagcagcgcGAGGTGCTCTGCACCAGGGAGAGTCAGGACAAGCGCAGCTACTCGTGCAAGGAGTGTTGTGGCAAGCCGTTGCCTTGCGGAAATCACAAGTGCAAGGATTCGTGCCACGCCGGCTCCTGTCGTCCCTGCAAGTTGAGTCCGCAGCAGATCACCAGTTGCCCCTGTGGCAAATTGGCTGTGCCTCCGACGCAGCGCAGTAGCTGCCTTGATCCGGTGCCGACGTGCGAGGGCGTGTGTGGCAAGACGCTGCGCTGCGGCAAGCCGGCGCATCCGCATCAGTGCGCCAGCAAATGCCATTTGGGGCAGTGTCCGCCTTGCCCCAAACAGACGGCCGTCAAATGCCGTTGCGGTCACATGGATCAGCTGATCAAGTGCCGCCAGCTTTCGAGCCGGGCGGACGATGCGCGATGCAAGCGCCGTTGCACGAAGAAACGCAGCTGTGGCAAGCACAAATGCAACGCGGAGTGTTGCATCGACATCGACCATGCCTGCCCGCTGCCCTGCAACCGAACGCTGAGCTGCGGCAAACACAAGTGCGATCAGCCCTGCCATCGCGGTAATTGTCCGCCCTGCTATCGCAGCAGCTTCGAGGAGCTCTACTGCGAGTGCGGCGCCGAAGTGATCTACCCACCGGTGCCGTGTGGCACAAAGCGGCCGACCTGCAAGCGACCCTGTTCGCGTACCCACGGATGCGAGCATGTGCCGCTGCATACTTGCCATGCGGCGGCCAGCTGCCCGCCCTGCATGATATTAACCACGAAGTGGTGCCACGGCAATCACGAGCAGCGCAAGACGATACCCTGCTCGCAGGCCAGCTTCAGCTGTGGGTTTCCCTGCGCCAAGCCGCTCGCATGTGGCCGGCATAAATGCATCCGGCCGTGCCACGAGGGCGAGTGTCCACAGCAGCCTGGCGAGCTGTGCCGCCAGAGCTGCAGCAAGCCGCGTCTGTTGTGCGGCCACAAGTGTGCCGCTGTCTGCCACGATGGCGTCTGCCCCGAGACGCCGTGCAAGGAGCTCGTCGAGGTGCAGTGCGAGTGCGGCAATCGCAAGCAGAGCCGCAGCTGCCAGGAACTTGCCCGGGAGCACAGTCGCATTGCCACCGCCCAGCTGGCCTCCTCCATGGCGGAGATGTCGCGCGGCAACTACATGGAGCTCAGCGAAATACTCGCACCcaccaaaatcaacaaatccAATAAAACTTTGGACTGCAATGAGGAGTGTCGTCTGCTGGAGCGCAATCGCCGCTTGGCCATTGCCCTGGGGTCTCGGAATCCGGAGTCTCAGCTCAAGCCGCTGACGAAGTACTCGGAATTCTTGCGCGACTTTGCCAAACGCAATACTGCGCTAACCAAGAGCATCTACGAAACGCTCACCGATCTGGTCAAGCTGGCCAAGGAGAGCAAGCAAAAGTCGCGCAGTCACTCGTTCCCCATAATGAGTGGCACGAAACGTCAAATGGTGCACGAGCTGTGCAAAGCGTTCGGCGTGGAGTCCGTCTCCTATGGGCCCAATCGCAACGTGATCGCCACCGCGCACAAGGAACGCtgcTGGTTGCCCGCCACTAGCGTCATGGAGGTCGTGGCCCGCGAGTCCGGCCCGCGTCGCGTCCCGGTGCCCAGCAACAATGCCTGGGGCCTCAAGAAGTAG
Protein Sequence
MAEYWQQQQQTPPTQQQQLTNGAVAPNESVAAASNAAAASVAACNGQSNNNNNYVNFNQFITQHNLHSSNLGYSSGGAFGLTPASCSGSTANNSSSFGVGQYAAPVFGYQNGDGAGQHYPNLYSAFGNNPFAAPAAGGTAFDFSASKLQATAPEFVPNFAKLSLTTSKANSSSTNGNNNININNSNTATTQHTSHEAASSNAQRGLAKPVAGGNNTRQQQRRQDYREDRHEDRYERGKKPQKQQRYDNHRSNKRRDDWNRNRDRINGYSRAADELDTSNSNDSAQPSPEKQPEKQLPHQVSPRRAPDNEKLSQREKLMRDIEQRRLECLVCVEQIKAHHGTWSCQNCYHVLHLKCTITWASSSKSAEGWRCPACQNVLQELPRDYLCFCGKLKNPPLTRNELAHTCGELCCRIEGCSHACTLLCHPGPCPPCQANVLRGCGCGRTSKMMQCAMKQQLQCEAACDKPLNCAEHRCQQLCHAGKCEPCAEQVEQHCHCGKQQREVLCTRESQDKRSYSCKECCGKPLPCGNHKCKDSCHAGSCRPCKLSPQQITSCPCGKLAVPPTQRSSCLDPVPTCEGVCGKTLRCGKPAHPHQCASKCHLGQCPPCPKQTAVKCRCGHMDQLIKCRQLSSRADDARCKRRCTKKRSCGKHKCNAECCIDIDHACPLPCNRTLSCGKHKCDQPCHRGNCPPCYRSSFEELYCECGAEVIYPPVPCGTKRPTCKRPCSRTHGCEHVPLHTCHAAASCPPCMILTTKWCHGNHEQRKTIPCSQASFSCGFPCAKPLACGRHKCIRPCHEGECPQQPGELCRQSCSKPRLLCGHKCAAVCHDGVCPETPCKELVEVQCECGNRKQSRSCQELAREHSRIATAQLASSMAEMSRGNYMELSEILAPTKINKSNKTLDCNEECRLLERNRRLAIALGSRNPESQLKPLTKYSEFLRDFAKRNTALTKSIYETLTDLVKLAKESKQKSRSHSFPIMSGTKRQMVHELCKAFGVESVSYGPNRNVIATAHKERCWLPATSVMEVVARESGPRRVPVPSNNAWGLKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00496269;
90% Identity
iTF_00607498;
80% Identity
-