Dkok007202.1
Basic Information
- Insect
- Drosophila kokeensis
- Gene Symbol
- -
- Assembly
- GCA_035042145.1
- Location
- JAWNLT010000264.1:3606733-3607252[+]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.9e-27 8.7e-24 83.4 17.8 2 70 63 131 62 131 0.97
Sequence Information
- Coding Sequence
- ATGCAAACGGAACCGAAATCGAATCTTTATCCGCAAGCGCCAGATGCACCGCCGCAATATGGTGAGTTCGGTGGACCGTCGATGATACCAACGGAGACGCTGTCTGTGTCGCCTCCAGCGGCAGTAATTACCGTGCAGCAGCCCAACGTTTTTATGCAAGGTGGGCCACAAGCTCAGTTGGGTCGAGTGCCGGCAATGGCCACGTGCCCCTCGTGTCAGGCCCGACAGATGACAACGGTTAACCATGAGCCCAGCACTAAGACGCATCTCATCGCATTGCTCATCTGTCTAGTGGGTGgcatctgttgctgttgcataccCTACTGTGTGGACTCATGCCAGAGCGCAACGCACACCTGTTCCAGCTGTGGCGCCTACGTCGGCTCCTATCAGAATTGA
- Protein Sequence
- MQTEPKSNLYPQAPDAPPQYGEFGGPSMIPTETLSVSPPAAVITVQQPNVFMQGGPQAQLGRVPAMATCPSCQARQMTTVNHEPSTKTHLIALLICLVGGICCCCIPYCVDSCQSATHTCSSCGAYVGSYQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00514561;
- 90% Identity
- iTF_00620257; iTF_00567203; iTF_00495529; iTF_00593518; iTF_00497810; iTF_00525557; iTF_00597817; iTF_00607486; iTF_00521825; iTF_00560708; iTF_00610311; iTF_00574473; iTF_00559158; iTF_00497048; iTF_00597820; iTF_00521822; iTF_00567205; iTF_00497811;
- 80% Identity
- -