Dkan004909.1
Basic Information
- Insect
- Drosophila kanekoi
- Gene Symbol
- -
- Assembly
- GCA_037075305.1
- Location
- JBAMCE010000141.1:7995950-7997551[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.1e-16 2.2e-13 49.7 0.0 2 45 364 407 363 407 0.95 2 3 0.05 1e+02 2.8 0.0 28 37 437 446 436 451 0.90 3 3 1.3e-20 2.6e-17 62.3 0.0 2 42 473 513 472 515 0.96
Sequence Information
- Coding Sequence
- ATGGGGCACTCGTCCACAATTATGGATATACAGCGCGTTCTGCTGCATCAACAaagcaacaatcaacaatGCGAAGTATTGCTCGTGGCCAAAGACGGCATCAGTGTGCGCGCCCATCTTTTCGTACTGAGTACGTGCAGCGATCTGATGCGCAACCTGCTTGTCGATTTGCCCGCCGGCCAGGAGGCAACTGTCATTCTGCCAGACATTCGTGGTGAGCTGCTCGAGAGCATGTTGTCCTTTATTTACATGGGAGAGACCAGCTTACCCTCCGCCCTGCTCACCGAGTTTCTCGAGGCCATTAATCTATTGGGCATAAAATCTGCCATTAGTTTCGAAACCAATCCCACAGCCATGACCACCTCGAATGTTATAAGCGGCGCTATGGCGGTCGAGGCAGCCAAGTCAATTAGCGGCTTACACATTGCGAACACAGCCCTtatggaggaggaggaagaggaagatGCTAGTGCGGTGGTGGGTAAACTGGAGGTAGGCAATGCTGTACTTGCAAACCCCCAACAGCAGCACGAACAGGAAGGCCGGACCCTTGAATTCCTGGATGTCTACGGTGAACAGCCCAAAATAACGTATTCTATTGAACACATGGGTGGCACAAGCAGCGGgaatcaatatatattaacagAGAACACGGGAACATTTACTATAACACAATCAGCATCGTCTGTGGCCAAATTAGGTGTGGCAGGGAGCTCAGCTGTGGTGGAATCTGTGGCGACTGGTGAGCTGGGCGATGATGATGCAGAGGCTGAAAATACGGACGAACAGGACGAATCGGAGTCACAGTTAATTGAGGAGGAGTATGTTGGATCAGGTGATCCGTTAATAGAGATGAGCGCAGATGCCGATGTTGATATGCACGAAGATGGAATGCAGGAAGGAGAACCTGGAGACGAGGAAGAAGATGACGAATTGCTGGATGTGAAACCCCGAAAAGCTCACCTAgatatgaaaatgttaaaaacaaaGGCACGCCAACGACCAATGTCGGCAAAGGTTACAAAAAAGACAATGACAAAACAGTATCAACAGCACGCAGCActtaaaaaagaaagcaaggATGACATCAATGATGCCCTCGatctggcagcagctgccgtacTCCACGAAGGGCTCAGCCTACAAAAGGCTGCTGATCGTTACGACATATCGAAAACCGTGCTGTGGCGACGAGTACGCTCCAATCCGGCCTACATGAGAATAAAGCGTGAAAAGCCATCACTTTCGGAAGCATACGAACGCTTAAAAAACGGCGACTCGTTGAAAAGCATAAGCCAGGATCTGCATATACCAATGTCGACGCTGCACCGACACAAGGTGCGGCTTGCGGCACAAGGACGCCTGCCCGATTTTGTTGCTTGCCGGCGGCGGGATAGCACACCAAAGGATGAGCTGCGCGACAAGCTGGCCAAGGCAGTGCATGCCTGCATAAACGGAGGAATGTCGCAAAATCATGCAGCAAATCTCTTCGAAATACCCAAGAGCACGCTCTGGCGGCATTTGCAGCGTCGCGTGACTGAGGCGGAGCGTAAAGTCAAGGAGGAGCAGGAAGAGGACGACGATGAGGATgttcttaattaa
- Protein Sequence
- MGHSSTIMDIQRVLLHQQSNNQQCEVLLVAKDGISVRAHLFVLSTCSDLMRNLLVDLPAGQEATVILPDIRGELLESMLSFIYMGETSLPSALLTEFLEAINLLGIKSAISFETNPTAMTTSNVISGAMAVEAAKSISGLHIANTALMEEEEEEDASAVVGKLEVGNAVLANPQQQHEQEGRTLEFLDVYGEQPKITYSIEHMGGTSSGNQYILTENTGTFTITQSASSVAKLGVAGSSAVVESVATGELGDDDAEAENTDEQDESESQLIEEEYVGSGDPLIEMSADADVDMHEDGMQEGEPGDEEEDDELLDVKPRKAHLDMKMLKTKARQRPMSAKVTKKTMTKQYQQHAALKKESKDDINDALDLAAAAVLHEGLSLQKAADRYDISKTVLWRRVRSNPAYMRIKREKPSLSEAYERLKNGDSLKSISQDLHIPMSTLHRHKVRLAAQGRLPDFVACRRRDSTPKDELRDKLAKAVHACINGGMSQNHAANLFEIPKSTLWRHLQRRVTEAERKVKEEQEEDDDEDVLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00549654;
- 90% Identity
- iTF_00512829;
- 80% Identity
- iTF_00526683;