Dkan008610.1
Basic Information
- Insect
- Drosophila kanapiae
- Gene Symbol
- -
- Assembly
- GCA_008042475.1
- Location
- VNJM01002877.1:239187-246226[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1e-11 2.2e-08 33.7 0.0 1 40 688 728 688 731 0.90 2 4 5.8e-14 1.2e-10 41.0 0.1 2 39 743 780 742 783 0.94 3 4 1.4e-17 2.8e-14 52.6 0.0 1 45 797 842 797 842 0.98 4 4 1.4e-19 2.8e-16 59.0 0.0 1 43 849 892 849 893 0.97
Sequence Information
- Coding Sequence
- ATGGCTGAGAAGGAGATGGGGGTGGAGATGGAGCGGGTACGGGAGCTGGAGGATGGAGATGGCCATGGCTACGTGGGTGGCGATGTGCTGGGTGACAACAGTGGACAGTGGACAGTGGAAGGTGGACGGGGCCTCTTGCGCACCGCCGAACAATTAAAGATCAAGGGCCTCTGCGAAACCGCCGAGAATGCGGATGACTTGAACGACGCGGCCACAGCAACGATCACAGTATCGGAGAATATTCAGCAGGCTGTTGTGGGAAACATAGTTAATGCCACCATAGTTCCTGGAGCTCCTTCGCCCTCTTtggaacagcaacagcagcagcagcagcaacaccaccaatcacaggaccagcagcagcagcagcagcaggttcatgcccagcaacagcaacagcagcaaatcaACGCCGCTTTGCTGACGCAACACGGCGGAGTGCCAAGTGGCAGCAGTGGTGTTCCCCTTACCGGACAGTTGTTGAGCTCCACAGCGAGCGGCAGTAGTGGTAGCGGTAACTCCGCTTCTTCACTGACACCATCCGGCGGCTTACAGGCGACGCCACGCAAATCTCGGCTAAAGCGATCCAAGTCACCGGATTTGCCCACAGGCTCTGGCAGCTCAAGCAGTTcacagtcgcagcagcagcagcaaccgcagcCAGCACACCACCATCCCCACCAGACCATTCTTATCCAGGGTCAGAATCCCACATCGATTGTTAGCCTACAGCAGACGGCCGACGGCAATTATATACCTGTGGGAGCAGGAACTGGCGACGAATCGGACACCGAGAACGATCACGAGCACGAGCACGAACACGAACACGAGCATATCCACGGACACGggcacggacacggacacggacatcCACACGGACACGGCCatagtcacagtcacagtcacgaTCACGATCACGATCACGAGCTCGAGAATAAACCGAATAAGATCTGTAAAACGGAACAGTCGGTGGCATCGCCGGCGTCCAATTCATCGAGCGCCAATTCAAACAATGCAGCGGGCGTGAGCGGCGGCGTGTCCACCACCGGCAACCAAGCCATCGTCACACAAATTGTAGTAGCGCGCGACGGAAAAGATTCAAAAAATATGACTAGTTTAGGCATGGGCATGAATGGCGGCCTATTGGGCGTGCCCATGGGATTCCTGGACTTTACACCCGAGCCACCAGCACCATCCGCCACCCCAGTCACCGTTACGGAGCACGTCGATCTGTCCTGCAACCCCAGCACGGACACGCGCGATCTATCAAATCCCACCGAACCGCTCGATATTGACAATCATTTGGCCCAGCAAATCCATCGGCTCGATCAGTCCCCCATGCACTCGATATCCCATCATCATACCGGCGATGAGAGCAACTCGAATCTGGTGCAGCACATCAAGAGCGAGGTGATTGAGGCCAAGcatctggctgctgctgcccagcagCATGCCTTGAgccaggcccagcagcaacagcagcagcagcagcagcagcatgcccATCACcaagcccagcagcagcaccagcaacagcagcaccaacagcagcaacagcagcatcttCATGCCCAGCAGTTgcaacagttgcagcagcagcagcaacagcaacagcagcaacagcaacagcatcaccagcagcaacaacagcaggcggcagccgcggcggccgcagcagcagctgctgctggtgtgcATGGCCAGCATGGGGGACATGTGACGCACGCCGATATTGGAGGTGCCACAGTCATGGAGATCGATCCGAGCCAAATTAAACACGAGCCGGGCATGATAATAACGCCAGAGATTGTCAATATGATGTCCTCAGGACATATGGACATGTACAATTCGGACACGAGCGAGGATTCAATGATGATCGCCAACGGCTCGCCGCACGATCAGAAGGAGCCGCACTATACGAATTTGGATCAGCAGCACGGtctgggcggcggcagcgtTTGTGGCCCGGGGCcaggtggtgctggtggtggtgggggcATGAGTGGTGgggctggctctggctctggcgaGAAAGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAACCAAAACATGAGCCTGACGAAAGCGTCCGCCATTTATGGCATCCCATCGACCACCCTATGGCAACGTGCACATCGTTTGGGCATCGAAACGCCCAAGAAGGAGGGCGGCACCAAGTCATGGAACGAGGATGCTCTGCAGAATGCCTTGGAGGCGTTACGTTCGGGTCAGATATCCGCGAACAAAGCGTCCAAGGCCTTTGGCATACCCTCGTCGACGCTCTACAAGATTGCCCGACGGGAGGGCATCCGCCTAGCGGCACCGTTCAATGCCGCCCCAACCACGTGGACGCCCGAGGATCTGGAGCGTGCCTTGGAGGCGATACGGGCGGGTAATACATCGGTGCAGAAAGCAAGCGCCGAATTTGGCATACCAACAGgaactctTTACGGACGCTGCAAGCGGGAGGGCATTGAGCTGTCGCGTTCAAATCCGACGCCCTGGTCCGAGGATGCCATGAACGAGGCCCTCAACTCTGTGcgTGTCGGCCAAATGTCCATCAACCAGGCGGCCATTCACTATAACCTGCCCTACAGCTCGCTCTATGGCCGCTTCAAGCGTGGCAAATACGATGTGGTGGCCAATACGAGTGGCGTGGCGCTGCTCAACACCTCGGGCAATACCACCGGCAGCATTGAGATTATCGAGCACAGTCAGGAGAATTCGttGCACATGTTGCAGCAACAGTTCCCGTACAGTCCGTCGCCGCATCCCCCAACGCCGCAGCATCACAGCACGCCGCAGCACCATAGCTCGGCGCAGGGACCGCCCACGCCGCAGCacatgcaacagcaacagcacgtGGTGCATATGCAACAGCAATCGCCCCATCCGGGCCACCATCCGCAGCACATGCAGCAGGATGTGGTTACGTCGAGCAGTCAGGTGGTGcacagccaacagcagcagcagcagcaacagcagcttcaGCAGATCTATCAGCACCACGGGACGCCGGAGCGTAGTTGA
- Protein Sequence
- MAEKEMGVEMERVRELEDGDGHGYVGGDVLGDNSGQWTVEGGRGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQAVVGNIVNATIVPGAPSPSLEQQQQQQQQHHQSQDQQQQQQQVHAQQQQQQQINAALLTQHGGVPSGSSGVPLTGQLLSSTASGSSGSGNSASSLTPSGGLQATPRKSRLKRSKSPDLPTGSGSSSSSQSQQQQQPQPAHHHPHQTILIQGQNPTSIVSLQQTADGNYIPVGAGTGDESDTENDHEHEHEHEHEHIHGHGHGHGHGHPHGHGHSHSHSHDHDHDHELENKPNKICKTEQSVASPASNSSSANSNNAAGVSGGVSTTGNQAIVTQIVVARDGKDSKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSISHHHTGDESNSNLVQHIKSEVIEAKHLAAAAQQHALSQAQQQQQQQQQQHAHHQAQQQHQQQQHQQQQQQHLHAQQLQQLQQQQQQQQQQQQQHHQQQQQQAAAAAAAAAAAAGVHGQHGGHVTHADIGGATVMEIDPSQIKHEPGMIITPEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQKEPHYTNLDQQHGLGGGSVCGPGPGGAGGGGGMSGGAGSGSGEKGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVALLNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTPQHHSTPQHHSSAQGPPTPQHMQQQQHVVHMQQQSPHPGHHPQHMQQDVVTSSSQVVHSQQQQQQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00619072;
- 90% Identity
- iTF_00594628;
- 80% Identity
- -