Basic Information

Insect: Drosophila jambulina
Gene Symbol: -
Assembly: GCA_018152175.1
Location: JAECXH010000027.1:10402622-10404323[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 7.7e-05 0.0056 17.0 2.2 1 23 94 116 94 116 0.96

2 11 8.2e-08 6e-06 26.3 1.7 1 23 122 145 122 145 0.97

3 11 1.4e-05 0.001 19.3 0.9 1 23 151 173 151 173 0.98

4 11 1.6e-05 0.0011 19.2 0.5 1 23 179 201 179 202 0.95

5 11 1.4e-06 9.9e-05 22.5 0.9 1 23 209 231 209 231 0.97

6 11 0.0061 0.45 11.0 1.0 1 23 237 260 237 261 0.95

7 11 0.00083 0.061 13.7 0.2 1 23 266 288 266 288 0.98

8 11 1.8e-05 0.0013 18.9 2.7 1 23 294 316 294 316 0.98

9 11 1.7e-05 0.0012 19.1 4.7 1 23 322 344 322 344 0.99

10 11 0.0016 0.12 12.8 0.9 1 23 350 375 350 375 0.95

11 11 0.0033 0.24 11.8 0.2 1 19 381 399 381 401 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	7.7e-05	0.0056	17.0	2.2	1	23	94	116	94	116	0.96
2	11	8.2e-08	6e-06	26.3	1.7	1	23	122	145	122	145	0.97
3	11	1.4e-05	0.001	19.3	0.9	1	23	151	173	151	173	0.98
4	11	1.6e-05	0.0011	19.2	0.5	1	23	179	201	179	202	0.95
5	11	1.4e-06	9.9e-05	22.5	0.9	1	23	209	231	209	231	0.97
6	11	0.0061	0.45	11.0	1.0	1	23	237	260	237	261	0.95
7	11	0.00083	0.061	13.7	0.2	1	23	266	288	266	288	0.98
8	11	1.8e-05	0.0013	18.9	2.7	1	23	294	316	294	316	0.98
9	11	1.7e-05	0.0012	19.1	4.7	1	23	322	344	322	344	0.99
10	11	0.0016	0.12	12.8	0.9	1	23	350	375	350	375	0.95
11	11	0.0033	0.24	11.8	0.2	1	19	381	399	381	401	0.96

Sequence Information

Coding Sequence: ATGGTACGCAGTCGTCGCAGCTTGTCCAAGGAGGATGCGGTATCCCTGCTTACGGACAGTGGAATCTCGCTATCCTCGCCGCCGGCGGCACGGGATACTTCGCCCACGCCCATCACATCTGCCTCCATAAAGAGGCGGAAGAGCAGCTTGGCCAGTCTGCGAGATGCATGCACCGAGGATGACGAAGAAGCAGCCGACCAGGACTCCAAGGACGCCGACTATGTGCAGCCACCGCCGAAGAAGTCCCCGCGCAAGGCAGAGACCGGAAAGCGAAAGCATCATATTTGCAGTCACTGCTCCAAGGAGTTTGGTGGCAAGACAGACCTGCAGCGCCACATACTCATCCATTCGGACGAACGGCCCCACAAGTGCAAGGACTGCGGAAAGAGCTACCGCCAGGCAGTAAACCTTAAGAACCATATTACCACCGCCCATGAGCATCGAAAGCAATTCTCTTGCTCACAGTGCCCCAAGTCTTTCGCCCTCAAGGAGCGCCTGCGCCTGCACATGCGACTCCACTCCGGTGAGAAGCCGTATCCGTGCGCCCTGTGCGACAAGAAATTCGCCAGGGGAGGTCAGCTCCAGCAGCACATGGTGTCACACCACAAGACCAGCATCCAGCAGTTCAACTGTACCAAGTGCTCGGCCAGCTTCTCGACGAACGCCAACCTGAGGGTGCACATGGAACGCCACGAGCAGGGGATGGAGCACCGCTGCAGCATCTGCGAGAGCCAGTTTGCAAACGAGCTGGCCCTGCGGGCCCATATCAATCAGGAACATCACAAGCTTACCCAGTTCGAGTGCGAAATCTGTCACAAGACCATCGAGCCGGACGAGGATCTGGCCACGCACATGCAGAAGCATGCGGCGGTTAAAACACATGTCTGCGAAGTATGCAACTCGTACTTTACCCAAAAGAGTCAGTACAATGTCCACATGAGAATGCATACGGGCGAACGGCCCTACCAGTGTCGGATCTGCCATCAGACCTTTGCCCACTCCAGCGTACTGAAGCTGCACATCCGCAAGCACACGGGCGAGAAACCCTTCCGCTGCCAGCTGTGCGAGGATGAGGTGGCCTTCTCCCAGCTGGCGCATCTGAAGAACCACATGAAGAAGATTCACAAGCAACAAAAGCCGTACATGTGCGAGGGCTGCCACGAGTTCTTCAAAATCAAGGTGGAGCTGCAGGCGCATTCGGAACAGTGTGTGAAGTGTCCCGCTGGCGGGGACGAGTCCACCGACAGCCAATCCGTGGATGCGGTGACCCTCTCCACAATGCGCTTTAATATAGCCGTGGTGCTCAAGAAGATAAGCTCAGCACAGAAGCTACGCCAGTTGGGCTACGAGAAGCGTCTTATAGACAATGTGATCATAGCATCTCTGAAGCTTGCCCAAAGGCCCACGCACGACGACGCCCAGCTAACGCCCCTCTCCCGGCTTCGTCTGAATGTGGAGGAGTTCCTCAAGTGGATTGTTCCGGCGCCCACAATGAAGAAGTTCAGCGAGGAGATGCTGTCCATCGACACCATTCTCGACAAGATTGCCACCATGTATATGAAGCAGAAGTAG
Protein Sequence: MVRSRRSLSKEDAVSLLTDSGISLSSPPAARDTSPTPITSASIKRRKSSLASLRDACTEDDEEAADQDSKDADYVQPPPKKSPRKAETGKRKHHICSHCSKEFGGKTDLQRHILIHSDERPHKCKDCGKSYRQAVNLKNHITTAHEHRKQFSCSQCPKSFALKERLRLHMRLHSGEKPYPCALCDKKFARGGQLQQHMVSHHKTSIQQFNCTKCSASFSTNANLRVHMERHEQGMEHRCSICESQFANELALRAHINQEHHKLTQFECEICHKTIEPDEDLATHMQKHAAVKTHVCEVCNSYFTQKSQYNVHMRMHTGERPYQCRICHQTFAHSSVLKLHIRKHTGEKPFRCQLCEDEVAFSQLAHLKNHMKKIHKQQKPYMCEGCHEFFKIKVELQAHSEQCVKCPAGGDESTDSQSVDAVTLSTMRFNIAVVLKKISSAQKLRQLGYEKRLIDNVIIASLKLAQRPTHDDAQLTPLSRLRLNVEEFLKWIVPAPTMKKFSEEMLSIDTILDKIATMYMKQK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00580113;
90% Identity: iTF_00490210;
80% Identity: -