Basic Information

Gene Symbol
nfxl1
Assembly
GCA_018903935.1
Location
JAEIFP010000277.1:1230506-1235087[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.57 5.2e+03 -2.4 0.5 15 18 90 93 89 94 0.81
2 18 2 1.8e+04 -8.1 6.4 15 19 147 151 146 151 0.82
3 18 0.066 6e+02 0.6 0.4 4 10 182 188 181 188 0.96
4 18 6.5e-08 0.00059 19.8 15.5 1 18 196 212 196 213 0.98
5 18 1.6 1.5e+04 -3.8 2.6 6 10 239 243 238 243 0.89
6 18 2.7e-06 0.025 14.6 15.0 1 19 249 268 249 268 0.96
7 18 0.63 5.8e+03 -2.5 0.6 5 10 292 297 292 297 0.88
8 18 1.9e-08 0.00018 21.5 9.8 1 19 303 323 303 330 0.94
9 18 7.2e-09 6.6e-05 22.9 13.9 1 18 357 374 357 375 0.97
10 18 1.4 1.3e+04 -3.7 2.8 9 13 381 385 379 393 0.65
11 18 0.00076 7 6.8 14.4 1 18 409 426 409 427 0.97
12 18 2.4e-08 0.00022 21.2 14.8 1 19 436 454 430 454 0.90
13 18 3.3e-05 0.3 11.2 7.6 9 19 499 509 497 509 0.88
14 18 0.0014 13 6.0 6.1 1 12 521 531 521 531 0.96
15 18 5.4e-05 0.49 10.5 6.5 1 11 598 608 598 609 0.96
16 18 0.03 2.8e+02 1.7 14.6 1 18 637 653 637 654 0.95
17 18 1.7 1.5e+04 -3.9 1.6 8 13 659 664 658 664 0.74
18 18 6.5e-07 0.0059 16.6 10.5 1 17 705 720 705 725 0.93

Sequence Information

Coding Sequence
ATGGAGGAGCATAAACATGTGCAATCAAAAAACTTGACAACTAAAAAGAGACTTGAGGCTACCTACATCTCTAGTTCAGAAGAAGAAGAAGAATTGGATGAAAAGCATATATTGGAACTATTGTACAAGCATTATCAACCCGTCTCGGATGCATCTCGAACCCACACTAGTCGTACATCCGTGTTCCTTGAAAATACACTGCATTCGGGTGCTGCAACATGCTTAATATGTATTGGTGGCATCAAACGCATAGAGGCAATTTGGTCGTGTCAAACTTGTTATTGTTTTTTTCACCTAAACTGCATTCAACGCTGGGCTAATGACAGTGTCATGCAAATGAAGGTAAAAGGAGAGCAGCAGGGAAATGACAATCAGGGCTATTATAATCATCTGGGGGAGTTTATTCCACCAAAGCGTAAAAAGTCGCTTCACTGGTGCTGCCCGCAGTGCCGTATGGAATATCAGCCGGAGGAGCGGCCGACAACCTACAACTGTTTTTGTGGTAAGGAAATCAATCCTCCTGCACAACCCTTCCTAGTTCCACATTCATGTGGTGAGGTCTGCGGAAAGTTTTTAAAACCAAAGTGTGGCCATGACTGCAAACTTCTATGTCATCCGGGGCCATGTCCACCGTGTGCGCAGCAGTCCGAAAATACTTGCCGTTGCGGCAAATCTGACCCACGACCTCTCCGCTGTATTGACAGAGATTGGCAATGCCAAGAAAAATGCGAAAAGCTTCTATCATGTGGTAAACACAAATGCAATCAGAGATGTCACCGTGCAGGAAACTGCCCAGGCTGCACCATGCAGAGTACCCAACCATGTGAATGTGGACGAGATACGAAGGTTGTCAGCTGCGCCAATAGAAGATGGAATTGCCAGAATATTTGTGGCGGCCGGTTTGTCTGTGGTCTGCATTCTTGTGATAAAATATGTCATAAAGGACCATGCGAAATGGGCGAGTGTCCTTTTGACGTCCGTAGCTGTCCCTGCGGAAAAAATAGCCAATCTTTGCCATGCAGTGAAGTGGTGGATTCCTGTGGCGACACTTGTCAAAAGATTTTGTCCTGCGGCAAACACACATGCACGCAACGTTGTCATCGTGGACCCTGCAATTCGTGCCTAGTCACGACAAAGAAGAAATGCCACTGTGGTCTGCACGAGAAGGAGCTGCCTTGTTCTAAAGAGTTCACGTGTGATACTAAATGCAAGCAAATACGGGACTGCGGAAAACATGCCTGCAACAGAAAGTGCTGCGGAGATCAGTGTTTGCCCTGTGATAAGATATGTGGCAAGCCTTTAAGTTGCAACAAGCATAAATGCCAATCGGTTTGTCACCGTGGGCCTTGTTATCCATGCAGACTGGAGTCAATGGTTAATTGCCGATGTGGAAAAACACGTCGAAGTGTTCCTTGTGGCAGAGAAAGAAATACACGGAACCTGTGTCCTGAGCTGTGTCGAGTTTCAGCTAAGTGTCATCATGTCGTAGAACATCGCTGCCATAAGGGTGAGTGTCCGCCATGCCGCCAGAAATGTGGCCTCCTAAATGATGTCAGCGGTTGTGGCCACATTTGCAAAGCGGTGTGCCACGAGGCCGTAAAAGTCAAGAATCACAAAGCTTTAAATATCAAAACGCAGATTAAAAAAATATATGAATATAAAGCCTTGCCACATCCGCGATGTGAGGAGAGCGTAAGCGTCAAGTGCATTGGAGGTCACGAAGTGATAACCACACCTTGCTGGAACTCTAAACCAACATCATGTTATCGCAAATGTGACAGAGTACTAAAATGTGGTAATCATCAATGTAATCTGACGTGCCACGCGGTCCCTAATTTGGAAAACATGCAGCAACAGGTAGGCTGTATCAATTGTGAAGAGGGGTGCGTTAGACCCAGACCCAATGGTTGTAGTCATCCCTGTCCCAAAAGCTGTCATTTACCTCCCTGCTCTCCATGCATCGTTCTGCTTAAAAGCAAGTGTCATTGCGGACTCATACAAGTAATGTACAAGTGCAGCGAATTTTTTAACGCGACGGGCTCAATCCAGGATCTTCTTGAGCAAAAGGAGAGATTGGGAAGCTGCGGGAATCGTTGTATTAAAAATTTTCCTTGCGGTCATCGATGTCTGGCCGTTTGTCACTCTGGCAAATGCCCAAGTCCTGAGCTATGTCGTAAGAAAGTACGCATTTACTGCCCATGCAAAAGGATCAAGCAAGAAATTTCATGTGATATTCATCGAGCTGGCCAATTGTTACTACAGTGCAATTCCCAATGTGAAGCTGATCGCTCACGCGGACTTAAAGAACTTTCACTAAAGCAACACTTGGAGGAAGAAAAAAATCGCCTGGAGTTGGAGAAATTTCAACAAAAGTTTGGAAAGCGCAAGCATAGGGAGCGCAAAATTGCAGACATAGTGCCTAGCCAAAAGAATTTTAATTGGCACCGCGGAGCTATCTATGCTGTGTTTTTAGCGGCAACACTAGGGGCGCTGGCAGTAGCCTACTATGCAGATAGGTAA
Protein Sequence
MEEHKHVQSKNLTTKKRLEATYISSSEEEEELDEKHILELLYKHYQPVSDASRTHTSRTSVFLENTLHSGAATCLICIGGIKRIEAIWSCQTCYCFFHLNCIQRWANDSVMQMKVKGEQQGNDNQGYYNHLGEFIPPKRKKSLHWCCPQCRMEYQPEERPTTYNCFCGKEINPPAQPFLVPHSCGEVCGKFLKPKCGHDCKLLCHPGPCPPCAQQSENTCRCGKSDPRPLRCIDRDWQCQEKCEKLLSCGKHKCNQRCHRAGNCPGCTMQSTQPCECGRDTKVVSCANRRWNCQNICGGRFVCGLHSCDKICHKGPCEMGECPFDVRSCPCGKNSQSLPCSEVVDSCGDTCQKILSCGKHTCTQRCHRGPCNSCLVTTKKKCHCGLHEKELPCSKEFTCDTKCKQIRDCGKHACNRKCCGDQCLPCDKICGKPLSCNKHKCQSVCHRGPCYPCRLESMVNCRCGKTRRSVPCGRERNTRNLCPELCRVSAKCHHVVEHRCHKGECPPCRQKCGLLNDVSGCGHICKAVCHEAVKVKNHKALNIKTQIKKIYEYKALPHPRCEESVSVKCIGGHEVITTPCWNSKPTSCYRKCDRVLKCGNHQCNLTCHAVPNLENMQQQVGCINCEEGCVRPRPNGCSHPCPKSCHLPPCSPCIVLLKSKCHCGLIQVMYKCSEFFNATGSIQDLLEQKERLGSCGNRCIKNFPCGHRCLAVCHSGKCPSPELCRKKVRIYCPCKRIKQEISCDIHRAGQLLLQCNSQCEADRSRGLKELSLKQHLEEEKNRLELEKFQQKFGKRKHRERKIADIVPSQKNFNWHRGAIYAVFLAATLGALAVAYYADR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00571590;
90% Identity
iTF_00612497;
80% Identity
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