Dins005519.1
Basic Information
- Insect
- Drosophila insularis
- Gene Symbol
- -
- Assembly
- GCA_018903935.1
- Location
- JAEIFP010001798.1:1552394-1555546[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.036 2.8 8.6 5.3 2 23 219 241 218 241 0.94 2 15 0.023 1.8 9.2 2.8 2 23 283 304 283 304 0.96 3 15 0.05 4 8.1 0.4 1 19 372 390 372 392 0.82 4 15 0.0015 0.12 12.9 1.7 1 23 402 425 402 425 0.98 5 15 0.00017 0.014 15.9 0.2 2 23 430 451 429 451 0.97 6 15 0.0091 0.71 10.5 1.7 1 22 499 520 499 523 0.90 7 15 4.7 3.7e+02 1.9 0.7 3 21 530 548 530 549 0.85 8 15 0.0085 0.67 10.6 3.7 1 23 568 593 568 593 0.96 9 15 0.0046 0.36 11.4 1.7 2 23 624 646 623 646 0.94 10 15 0.0027 0.21 12.1 0.3 3 23 653 674 651 674 0.92 11 15 0.019 1.5 9.5 0.3 2 23 678 700 677 700 0.94 12 15 1.2e-06 9.8e-05 22.6 1.8 1 23 706 728 706 728 0.98 13 15 0.006 0.48 11.0 3.3 1 23 732 755 732 755 0.94 14 15 0.00077 0.06 13.8 0.8 1 23 761 784 761 784 0.96 15 15 0.078 6.1 7.5 0.5 5 23 797 816 788 816 0.85
Sequence Information
- Coding Sequence
- ATGAACATGGACAAAAAGTTACAAAAATGTCTGCATTGTACAGTGGTCAATCCAAAATTAAAATACCATGAAATATTCAAAGGACTTGGCGCAGAAATTAGATTGCAACAGTTATTGGCAAATCATTTCCAATTTGAGGTCACCGAAGACTCGACCAACTCGCAGCTACTTTGCGAAGAGTGTGTCAATAGTTTGATTCGATTTTTTGACATCGATGAATTGAAACGGGAGCAGAATGCAGCCAGGTCAAATAATCAGCCCTCTGAAGCAGCTAACGAAGTGGATGTGGGAAAATCAATTATTGATGAGTCCTGCATTTATGATCTTATTTTTAAATCGGATGATATTGCGCCGGCGGATGAGGAGGAGGTGGAGGAGGAAAACGATGTTACCAGCAAGTCAAAGCAGGTGAGAATTGAAGATGTTATTGTGGAGGATCGTGTAACTGTAATCCGATTGCCGAATGATGATGAAGCAGAGGAAGTGGATTTGGAAACTGAACATGAAGACGAACATGACCTTAAAGAAGACAGCAATGTGGTAATCATAAATTTCGTGGAAATTAAAGAAAAGGATGACATTGTTGATTTATATGCCTACTTGGCCACTGCGGTGAAAACGAACTTTGAAAACTTGTCCTTTGAGTGGAGCACCAGCTGTAAACACTGCTCTTTGGCTTGCACGAATTATCAGCAGCTACTTAAACATATGGTCAAAAGGCACAATGGTCCTTCCTTTAATTGCCCCATTGAGGGTTGCTTAAAGAAAGAATTGCAGGATAAGCAATACCTAGCCATGCACTTGGTTACCCATCATGGTCCAGTGGCTGAGATACCCATTTATGGCAGTTGTCCGGAGTGCAAATTAACTTTCTCAAATATTTTGCAATATAATAAACATTCATGTTCTCATGTGATTAAGAAGAAACGGGGAATGCAGCTCTATTGCGAAATGTGCTCTATTGAGTTTCCCTCTTGGAAACGTTTTAATTTCCATAATCAATTCCATTTGGAGCGTCATCGACCACGAGCCTGTTTTGTTTGCAACTATGCGGACAACAATATCGGCGAACTCTTCCAGCATTTGCATTACGCCCATGAACCAGAGAATACATTCTTTTGTAATCTTTGTGATCGCACTTTTCGCGATGAAGCCGTCTATTTGGAGCACAATAAATGCCATTCGAATGCCAATAGTAATACATACACTTGTGGTGAATGTTTCAATACTTTTGACACACGAAGTCGCTTCAATGGACACATGCGTTCTATGCATGGCACTTTTATTAGTTGCGAAATTTGTTCCCGTGAATTTGCCAGCGAAGCCACCTACAATGTCCATATGAAGAAGCATTTGATCATTGAAAGAGATGTTCATATATGTAGAAATTGTGGTCAATTGAGTGAACATGAGAATCGTATGCTTCAGCATATAGAAAATGAATCAACAAATTGTCATAATGCTGAAATCTATACTGAACTCTTACGAAATGCTTATATATGCGAAATGTGTTCATCTTATTTTCGTGAAAAATCTGATTTACATAAGCATCGTCAGTCGGGTGTCCATAATAATGGTATATTTTGGTGTCAGCCATGTGACAAAGAGTTCACTGATATGAAAATATATCGTCATCATTTGAGAAATTTTCAACAATTAAAAACGGATACAGAACATAGGAAATTGGAAATATGCTTATACTATATGTGTGATCAGAAGGATTGCTTTGAATCATATACGCATTGGAATTCCTTGTACACCCATAAGAGACGCACTCATAAAAACAATATGACGTCAGCTAAAGTGAAAGATGACCAACAAGTACCATCCACATCGAATTCAGTTGGCAGTGAAAAAAAAACGCAATGGCAATGTCAGTTTTGTGATAAGGAATGTCGTTCCAAAATGTCATTATCCGTTCATGTGGCACGCAGTCATAATAATGATAATGTGATATGTTCTATATGCAATGCATCGTATAAGAATCAAGAGGCTTTGGATAAACATCATGCCTATTGGCATGAGCCTATTGAGTGTCCCAAATGCTTTAAGATTGTAAAGAATCGTCGGAATTATGATACTCATGAGAATGTTGTTCATTCCAATAATAAACGTTATACCTGTGAGATTTGTGACAAAGGTTTCTATCACAACAGCGAAATGAAAGCGCATCAGAGGCTTCATACTCAGTTGTTTAGTTGTAAGCACTGCAGCTTTACCACACGAAAAAAATCTTCCTTATCCGTTCATGTCATGGGTCAGCATTTGAACCGTTTTGCCTTTGACTGCAAATTGTGCATGAAACGGTTTGGTCGTCGTCAGGGATTGACCGCACATATGCAACGTGTGCATAGCACTAAACATATTTGTCAGGAATATATCACTAATGGTTGCAATCGTAGTTTTCCCTCAACATTGGCATTGAGTCAACATGTTAAGAAAGTTCACAAAGCAACTATATTTCTGCACGATGAAGACGATGAGGAGGAGGAGGAAATGGAGCTAGAGCTGGAGGATGAGGATGGTCCATCATCATCTAAGAAACGTCGTTTTCAAATAAATGATACCGAAATTGAGTTTATCGACGAGAGTGCTTATGATAGTCAGGAATTTATAGATACAGAGGAAATGCAGAATGACAAGTAG
- Protein Sequence
- MNMDKKLQKCLHCTVVNPKLKYHEIFKGLGAEIRLQQLLANHFQFEVTEDSTNSQLLCEECVNSLIRFFDIDELKREQNAARSNNQPSEAANEVDVGKSIIDESCIYDLIFKSDDIAPADEEEVEEENDVTSKSKQVRIEDVIVEDRVTVIRLPNDDEAEEVDLETEHEDEHDLKEDSNVVIINFVEIKEKDDIVDLYAYLATAVKTNFENLSFEWSTSCKHCSLACTNYQQLLKHMVKRHNGPSFNCPIEGCLKKELQDKQYLAMHLVTHHGPVAEIPIYGSCPECKLTFSNILQYNKHSCSHVIKKKRGMQLYCEMCSIEFPSWKRFNFHNQFHLERHRPRACFVCNYADNNIGELFQHLHYAHEPENTFFCNLCDRTFRDEAVYLEHNKCHSNANSNTYTCGECFNTFDTRSRFNGHMRSMHGTFISCEICSREFASEATYNVHMKKHLIIERDVHICRNCGQLSEHENRMLQHIENESTNCHNAEIYTELLRNAYICEMCSSYFREKSDLHKHRQSGVHNNGIFWCQPCDKEFTDMKIYRHHLRNFQQLKTDTEHRKLEICLYYMCDQKDCFESYTHWNSLYTHKRRTHKNNMTSAKVKDDQQVPSTSNSVGSEKKTQWQCQFCDKECRSKMSLSVHVARSHNNDNVICSICNASYKNQEALDKHHAYWHEPIECPKCFKIVKNRRNYDTHENVVHSNNKRYTCEICDKGFYHNSEMKAHQRLHTQLFSCKHCSFTTRKKSSLSVHVMGQHLNRFAFDCKLCMKRFGRRQGLTAHMQRVHSTKHICQEYITNGCNRSFPSTLALSQHVKKVHKATIFLHDEDDEEEEEMELELEDEDGPSSSKKRRFQINDTEIEFIDESAYDSQEFIDTEEMQNDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00503490;
- 90% Identity
- iTF_00503490;
- 80% Identity
- -