Basic Information

Insect: Drosophila innubila
Gene Symbol: -
Assembly: GCA_004354385.1
Location: NW:23677222-23696458[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 7e-05 0.004 17.1 1.6 1 23 341 363 341 363 0.93

2 9 1.7e-08 9.8e-07 28.5 2.6 1 23 369 391 369 391 0.98

3 9 7.2e-06 0.00041 20.2 0.8 1 23 397 419 397 419 0.98

4 9 5.2e-06 0.00029 20.7 1.0 1 23 425 447 425 447 0.97

5 9 2.5e-05 0.0014 18.5 1.4 2 23 539 560 538 560 0.96

6 9 2.7e-09 1.5e-07 31.0 1.6 1 23 566 588 566 588 0.98

7 9 0.0033 0.18 11.9 0.9 3 23 596 616 594 616 0.97

8 9 6.3e-05 0.0036 17.3 1.4 1 23 622 644 622 644 0.99

9 9 0.015 0.82 9.8 1.1 1 23 651 675 651 675 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	7e-05	0.004	17.1	1.6	1	23	341	363	341	363	0.93
2	9	1.7e-08	9.8e-07	28.5	2.6	1	23	369	391	369	391	0.98
3	9	7.2e-06	0.00041	20.2	0.8	1	23	397	419	397	419	0.98
4	9	5.2e-06	0.00029	20.7	1.0	1	23	425	447	425	447	0.97
5	9	2.5e-05	0.0014	18.5	1.4	2	23	539	560	538	560	0.96
6	9	2.7e-09	1.5e-07	31.0	1.6	1	23	566	588	566	588	0.98
7	9	0.0033	0.18	11.9	0.9	3	23	596	616	594	616	0.97
8	9	6.3e-05	0.0036	17.3	1.4	1	23	622	644	622	644	0.99
9	9	0.015	0.82	9.8	1.1	1	23	651	675	651	675	0.95

Sequence Information

Coding Sequence: atggccaTAAATTTCTCGGCCTCCTTTGCGGCCTGCATAGCAGCAGGTCTGAAGGTTCCCCGCCAGATAATGTACTGCATCACACAGGATACGGGGCAGCCGTATGTGCTGTACAAGGACTCGCAGGATGCGGAACGTAATGCCGGCGCGATTGGGGCAAGTGCCGCACAATGGGGCAGCGATATGTATCCCAATATCCAGCAACAGGCGCAGCAGCATCTCAacgcacagcagcaacaacagcaacagcagcagcagcaacaacaacagcagcagcaacaacaacagaacgCAACTGCCGCTGCGcaggcagcagcggcagcagcagcagcgggacAACCGCAGAGTCCCCCCGGCGGAGGCCAAGAGCCGCGCGACAATGGCAGCGGCGATGGGCGGCAACAGCAGGTGTCGCCCTCGTCGAGTCCATATCCTTcggtgcaacagcagcagcagcagcaacaacaacagcagagagCCAATGGCAATGCCGACGACGATGCCATGAATCAGcTTGCCAATCAACAGAACTCCGCGCCAAATCCAAACCAAAGCAGCAACGAGCCGCAGCACGCTGCCACAAATGGTGGCGAGGCTGGACAGGGGAATCCGCACGTGCAACAGAATGGAGGCGGCGGTGGTCAGCCGCAAGGGGATCCCGGCTTCCAGACGCCCGACTATTATGCGCCGCGTCATGGGGCGCCACAGGGTGGCATGCTGGCGCCACCTGGCTTCCCGCCACTGCACTATCTCAACAAGGGCGTCCTGCCGATGGAACAAAATGGCGGCGAGTCGTACGCGTTGCCAGAGTTGTTGCcgggccaacagcagcagcagcagaatgGGGCGCCACAGAATGGAGCTGGCAATCCGAATCAGTCgaatggcaatgccaatgaGAGCGCAACGGCTGCAAATGGTGGCGCCACGGGCGGTGCGGCGGGGACAACGGGAACGCCGAGTGGACGGTCGGGACCTGGACGTCCGCATAAGAATAAGCCGCACAGCGATTTGCGGCTGTTCAAGTGCCTCACGTGTGGCAAGGACTTCAAGCAGAAGAGCACACTGCTGCAGCACGATCGGATACACACGGACGCTCGACCATTTCCCTGCTCCGAGTGCGGCAAGCGGTTTCGCCAGCAATCGCATCTGACGCAACACCTGCGCATCCATGCGAATGAAAAGCCATTCACCTGCCCGTACTGCTCGCGCAGCTTCCGACAGCGCGCGATTCTCAATCAACACATACGCATCCATTCGGGTGAGAAGCCCTTCGCCTGCCCCGAGTGCGGCAAGCACTTTCGCCAGAAGGCCATCCTCAATCAGCATGTGCGCACCCACCAAGATGTCTCACCGCATCTCATATTCAAGAACGGTCCCCACCCGACGCTTTGGCCCTCGGACGTGCCGTTCCCCGGCGAGGAGACGGACACAAAGGGAGACATTACCGTTGCCAGTGGCGGTTACCATGACGATGATTCGCAGGGTACTCCCGACGGCAGCGGTGGCATGCATTATCCCTCGTACTTTAAGGATAGCAAGGTAGGTCAAAAGATTCTACCCGAAGTCCTGCAACATATTGGAGTGCGGCCAGCCAATATGCCGCTCTACGTGCGCTGCCCCATCTGTGACAAGGAGTTCAAGCAGAAGACGACACTCCTGCAGCACGGCTGCATTCACATCGAGTCCCGGCCGTATCCCTGTCCGGAGTGCGGCAAACGTTTCCGCCAACAATCGCATCTCACGCAGCATCTGAGGATCCATACGAATGAGAAACCCTTCGGCTGCATGTACTGTCCGCGATTCTTCCGGCAGCGAACCATTCTGAATCAGCACTTGCGCATCCACACTGGAGAGAAGCCGTACAAGTGCAGCCAGTGCGGCAAGGACTTCAGGCAGAAGGCGATCCTGGATCAGCACACGCGTACCCACCAGGTAGGCGATCGTCCTTTCTGCTGTCCGATGCCCAATTGCCGGCGACGCTTTGCCACTGAGAATGAGGTGACGAAGCACATTGACAACCACATGAATCCGAACAGCACCAAGgtgcggcggcagcagcagcaacagcagcagcaacaggtgcaacagcagcaacagcagcaacaacagcagcagcagcaacaacagcaagtggtgcaacagcagcagcaacagcaacagaatgTTGCTGCCTCGGCAGCAGTTGTGGCAAATCATTTGATGAACGACGTCAAGAGCTTGGCGGCCCAACAAttcctcaacaacaacaatcccGCCACGGTGGACAACAAGGCCAACATATTGCCGGTGAGGAGCATGGCGGCCAatgcggcagcagctgctgcagttgcacaGCAATCGGTGGTGAAGAATGAGCTCTACTTTCCACAATGCTACGGCCCGCCCTTTCAGCATCCCTTCCacgcccagcagcagcagcagcagcaacaacagccgagTGCGGCACATGCCAATGGCGGACCGACGCCGCCGGTGACGGTCACTGTGGCGAATGCGGTGGCACCGGGTGTTGTGGTGCAACAGAATGCCGCTACCTCTGTGGTGGCTCAGTGA
Protein Sequence: MAINFSASFAACIAAGLKVPRQIMYCITQDTGQPYVLYKDSQDAERNAGAIGASAAQWGSDMYPNIQQQAQQHLNAQQQQQQQQQQQQQQQQQQQQNATAAAQAAAAAAAAGQPQSPPGGGQEPRDNGSGDGRQQQVSPSSSPYPSVQQQQQQQQQQQRANGNADDDAMNQLANQQNSAPNPNQSSNEPQHAATNGGEAGQGNPHVQQNGGGGGQPQGDPGFQTPDYYAPRHGAPQGGMLAPPGFPPLHYLNKGVLPMEQNGGESYALPELLPGQQQQQQNGAPQNGAGNPNQSNGNANESATAANGGATGGAAGTTGTPSGRSGPGRPHKNKPHSDLRLFKCLTCGKDFKQKSTLLQHDRIHTDARPFPCSECGKRFRQQSHLTQHLRIHANEKPFTCPYCSRSFRQRAILNQHIRIHSGEKPFACPECGKHFRQKAILNQHVRTHQDVSPHLIFKNGPHPTLWPSDVPFPGEETDTKGDITVASGGYHDDDSQGTPDGSGGMHYPSYFKDSKVGQKILPEVLQHIGVRPANMPLYVRCPICDKEFKQKTTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPFGCMYCPRFFRQRTILNQHLRIHTGEKPYKCSQCGKDFRQKAILDQHTRTHQVGDRPFCCPMPNCRRRFATENEVTKHIDNHMNPNSTKVRRQQQQQQQQQVQQQQQQQQQQQQQQQQVVQQQQQQQQNVAASAAVVANHLMNDVKSLAAQQFLNNNNPATVDNKANILPVRSMAANAAAAAAVAQQSVVKNELYFPQCYGPPFQHPFHAQQQQQQQQQPSAAHANGGPTPPVTVTVANAVAPGVVVQQNAATSVVAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00537657;
90% Identity: iTF_00493805;
80% Identity: -