Basic Information

Insect: Drosophila innubila
Gene Symbol: -
Assembly: GCA_004354385.1
Location: NW:20785848-20798718[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 2.2e-05 0.0012 18.7 2.1 1 23 260 282 260 282 0.97

2 18 7.1e-06 0.0004 20.3 0.4 1 23 288 310 288 310 0.97

3 18 0.001 0.059 13.4 0.9 1 23 316 338 316 338 0.95

4 18 1.5e-05 0.00085 19.2 3.1 1 23 344 366 344 366 0.97

5 18 3.4e-05 0.0019 18.1 4.7 1 23 372 394 372 394 0.99

6 18 6.2e-05 0.0035 17.3 5.7 1 23 400 422 400 422 0.97

7 18 3.1e-07 1.7e-05 24.6 4.3 1 23 428 450 428 450 0.98

8 18 1.1e-07 6.2e-06 26.0 2.4 1 23 456 478 456 478 0.97

9 18 6.4e-05 0.0036 17.3 6.7 1 23 485 507 485 507 0.97

10 18 0.00011 0.0063 16.5 6.5 1 23 513 535 513 535 0.98

11 18 9.9e-06 0.00056 19.8 4.5 1 23 541 563 541 563 0.98

12 18 7.2e-06 0.00041 20.2 8.1 1 23 569 591 569 591 0.98

13 18 5.9e-06 0.00033 20.5 7.6 1 23 597 619 597 619 0.97

14 18 6.6e-07 3.7e-05 23.5 7.7 1 23 625 647 625 647 0.98

15 18 0.0002 0.012 15.7 9.5 1 23 653 676 653 676 0.95

16 18 7.3e-05 0.0041 17.1 0.9 1 23 682 704 682 704 0.98

17 18 0.00079 0.045 13.8 3.4 1 23 714 736 714 736 0.97

18 18 9.1e-06 0.00051 19.9 1.6 1 23 742 765 742 765 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	2.2e-05	0.0012	18.7	2.1	1	23	260	282	260	282	0.97
2	18	7.1e-06	0.0004	20.3	0.4	1	23	288	310	288	310	0.97
3	18	0.001	0.059	13.4	0.9	1	23	316	338	316	338	0.95
4	18	1.5e-05	0.00085	19.2	3.1	1	23	344	366	344	366	0.97
5	18	3.4e-05	0.0019	18.1	4.7	1	23	372	394	372	394	0.99
6	18	6.2e-05	0.0035	17.3	5.7	1	23	400	422	400	422	0.97
7	18	3.1e-07	1.7e-05	24.6	4.3	1	23	428	450	428	450	0.98
8	18	1.1e-07	6.2e-06	26.0	2.4	1	23	456	478	456	478	0.97
9	18	6.4e-05	0.0036	17.3	6.7	1	23	485	507	485	507	0.97
10	18	0.00011	0.0063	16.5	6.5	1	23	513	535	513	535	0.98
11	18	9.9e-06	0.00056	19.8	4.5	1	23	541	563	541	563	0.98
12	18	7.2e-06	0.00041	20.2	8.1	1	23	569	591	569	591	0.98
13	18	5.9e-06	0.00033	20.5	7.6	1	23	597	619	597	619	0.97
14	18	6.6e-07	3.7e-05	23.5	7.7	1	23	625	647	625	647	0.98
15	18	0.0002	0.012	15.7	9.5	1	23	653	676	653	676	0.95
16	18	7.3e-05	0.0041	17.1	0.9	1	23	682	704	682	704	0.98
17	18	0.00079	0.045	13.8	3.4	1	23	714	736	714	736	0.97
18	18	9.1e-06	0.00051	19.9	1.6	1	23	742	765	742	765	0.96

Sequence Information

Coding Sequence: ATGCAGCACGTGAGCGCTGCCAGTTCGGCACCTTCGGTGGTATCAGCACCGGTGGTGACCACTGGCGGTGGCACCACCATCACGTTAGGCGGACCGCCGCCATTACCGCCACATAAGGTCGATCATAAAGAGGACGGCGGCAAGCAGCCGCCACACGGCATTGAAATGTATAAAGTGAACATTGAGGATATATCGCAGTTATTTACGTATCACGAGGTCTTTGGCAAAATCCATGGAGATGTGGTGAATCATGTGGCGGCGGTGCATGGCAGTCAGTTGCCACCGCCACAactgccaccgccaccgccactgCCACCGCAGACGACGCATTCGGCTagcgcagctgcagcagcagcggcggcgtcCACAAATAATGCAGCCGTCGCTGCTGTAATGGCATCGGCcaatgcagcagcagcggctgcaGCGGCCGCATCAGCAGCGGCATcagctcaacaacaacagcaacagcaacaacagcaagcacaacaacaacagcaacaacaacagcaacagcaatcagTGACAAGCACTAATGCTGGAAGTCAGCAGGGCAGCGCCACGGTGACCACGACTAGCTCAGGTAGCAACGGGAACAATAATGGGGGTAATAAtgggggcaacaacaacaacaataataataataacaataacaataattcgACAACGACGACGGGTGAGTTGCTAATGCCGAAAATGGAGGGCGGCATTCATGGCGTCGATGGTCAGTCGAGCGTTTCGTTGGCGCCGGATGGCACGCCCATTGCGACTGGTACGCATGTGTGCGATATTTGTGGCAAGATGTTCCAGTTTCGTTATCAGCTGATTGTGCACCGTCGCTACCACAGCGAGCGCAAGCCGTTTATGTGTCAGGTGTGCGGTCAGGGCTTTACCACATCGCAGGATTTGACCCGTCATGGCAAAATCCACATTGGCGGTCCCATGTTCACCTGCATTGTTTGCTTCAATGTGTTTGCCAATAATACAAGTTTGGAGCGACATATGAAAAGGCATTCAACGGACAAACCATTCGCCTGCACCATTTGCCAAAAGACTTTCGCACGCAAAGAGCATCTGGACAATCATTTTCGTTCGCATACGGGCGAAACGCCGTTCCGTTGCCAGTACTGCGCCAAGACGTTTACGCGCAAGGAGCACATGGTCAATCATGTGCGCAAACACACGGGTGAGACGCCACATCGTTGCGATATTTGTAAGAAGTCCTTCACGCGCAAGGAACACTATGTTAACCACTACATGTGGCACACTGGTCAAACACCGCATCAGTGCGATGTCTGCGGCAAGAAATACACGCGCAAGGAGCATCTAGCCAACCATATGCGCTCCCACACCAACGAGACGCCGTTCCGTTGCGAAATCTGCGGCAAGAGCTTTAGCCGCAAGGAGCACTTCACCAATCACATACTCTGGCATACAGCAGGCGAGACGCCGCATCGGTGCGACTTCTGCTCCAAGACGTTCACTCGCAAGGAGCATTTGTTAAATCACGTGCGCCAGCACACGGGAGAGTCGCCGCATCGCTGCTCCTACTGCATGAAGACGTTCACGCGCAAGGAGCATCTGGTGAATCATATACGCCAGCACACGGGTGAGACACCGTTCAAGTGCACGTACTGCACGAAAGCGTTCACACGCAAAGATCACATGGTTAATCATGTACGGCAACATACAGGCGAATCGCCGCACAAGTGTACATACTGCACGAAGACGTTTACCCGTAAGGAGCATCTAACGAATCATGTGCGACAGCACACGGGCGATTCGCCGCATCGTTGCAGCTACTGCAAGAAGACGTTCACCCGGAAGGAGCATCTGACGAATCATGTGCGCCTTCACACTGGAGATTCGCCCCATAAATGCGAATATTGCCAGAAGACCTTTACACGCAAGGAGCATCTCAATAATCATATGCGCCAGCATTCAAGCGACAATCCCCATTGTTGCAACGTTTGCAACAAGCCCTTCACCCGCAAGGAGCATCTGATCAATCATATGTCACGCTGTCACACCGGCGATCGCCCCTTCACCTGCGAGACGTGCGGCAAATCTTTCCCCCTCAAGGGCAATCTACTTTTCCATCAACGCAGCCATACCAAGGGTCAGGAATGCGAACGTCCATTTGCCTGCGAAAAGTGTCCCAagaatttcatatgcaaaGGTCACTTGGTCTCGCACATGCGCTCCCATTCGGGCGAGAAACCGCACGCGTGCACACTGTGCAGCAAGGCTTTCGTCGAGCGGGGCAATTTGAAGCGCCACATGAAGATGAATCACCCAGATGCTATGATGCCGCCACCACCCgtgcatccgcatccgcaaaTACCGGCTGGTGTGCTGACCCAAGTCAAGCAGGAAGTGAAACCGATCATAATTCCCCATCACTCGGCGACGACAACAATGCATACCATCCAACAGATTACAGCtggagctgctgcagctggagcCGGTGCCGTTCAGTTAACACCCGGATTGGTGCCGCTGGTCACGAGCACGCTCATCTCGCACAATGCGCAGCAATcgcagaagcaacagcaggcggcagcagcagttgccgCACAACAGcaggcggcagcagcagccgctgcaCAGCAacaggcggcagcagcagcggccgCACAACAGCAGGCGGCAGCAGTGGCacatcagcagcatcagcaacaggtcgctgcacagcagcaacaacagcagcagcaggcggcagtggcagcacatcagcagcagcaacaacagttgcagcagcaacaattgctgcaATTATCGATTCAACAGGCggcacatcatcatcagcaacatcagcagcagcagcaacaacaacagcagcagcaacatcatcagcagcaacagcaacaggcacATCCACAGGCAccgccacagcagcaacaacagcaacagccaccgCCACAGGTGCCCATTGCATTGATAAGTGATCCAAGTGCATTGGCACGTGCTGccatgcaactgcaacatctACCCAGCAATGTTGAGCAACATCCGGTGGTTTACTAA
Protein Sequence: MQHVSAASSAPSVVSAPVVTTGGGTTITLGGPPPLPPHKVDHKEDGGKQPPHGIEMYKVNIEDISQLFTYHEVFGKIHGDVVNHVAAVHGSQLPPPQLPPPPPLPPQTTHSASAAAAAAAASTNNAAVAAVMASANAAAAAAAAASAAASAQQQQQQQQQQAQQQQQQQQQQQSVTSTNAGSQQGSATVTTTSSGSNGNNNGGNNGGNNNNNNNNNNNNNSTTTTGELLMPKMEGGIHGVDGQSSVSLAPDGTPIATGTHVCDICGKMFQFRYQLIVHRRYHSERKPFMCQVCGQGFTTSQDLTRHGKIHIGGPMFTCIVCFNVFANNTSLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDVCGKKYTRKEHLANHMRSHTNETPFRCEICGKSFSRKEHFTNHILWHTAGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGDSPHRCSYCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFTCETCGKSFPLKGNLLFHQRSHTKGQECERPFACEKCPKNFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPDAMMPPPPVHPHPQIPAGVLTQVKQEVKPIIIPHHSATTTMHTIQQITAGAAAAGAGAVQLTPGLVPLVTSTLISHNAQQSQKQQQAAAAVAAQQQAAAAAAAQQQAAAAAAAQQQAAAVAHQQHQQQVAAQQQQQQQQAAVAAHQQQQQQLQQQQLLQLSIQQAAHHHQQHQQQQQQQQQQQHHQQQQQQAHPQAPPQQQQQQQPPPQVPIALISDPSALARAAMQLQHLPSNVEQHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00560429;
90% Identity: iTF_00560429;
80% Identity: -