Dgri008257.1
Basic Information
- Insect
- Drosophila grimshawi
- Gene Symbol
- -
- Assembly
- GCA_018153295.1
- Location
- JAECXY010000847.1:21499144-21500344[+]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.7e-21 4.6e-18 64.8 18.1 4 70 131 198 129 198 0.95
Sequence Information
- Coding Sequence
- ATGGCAGAAAGTAGCCATCAGCCGAGCATGGCCGATCTAAAGCATCGCATGCTGTACCAGGGCCAGGATCCAAGTCAGCCGGTGCTGCGTCCAAGCCGTCAAGACGCACCCATCGCAGACCCACAGTATCCGCCAGCCTACGATGATGCCATTATCCAAAATGCGACAACTTTGCACCAGAGCAATCCACAATCGCACAGCGCTGACCGTCGCACCTTCTTTGCCGAGCCCCAGCATTTGAGCAGTCAACTGCTCGATGAGCGGCCTGAGCGGCATCAGCTGGCTGAGCAGCCGACACAGCAGCTACCAATTGATGGGCAGTACTCGAGTCTGCCGCAGGTGCGCAGCTTCGTTGCGTTGGCTCCGCAGCCTCAGTTCGGACTCCAGGCCTGTCCGATTGTGTGTCCTGCTTGTGGCAAGCAAGGACGCACACGATTGCAGCGCACGGCGAATATGAGGGCCCATTGCTGGGCGCTCTGGCTGTGCTTATTTGGCTGGTGCTGCTGCGCTTGTTGGTATCCGTATCTGATGGATAGCTGCCGGATCACGAGGCATTATTGCAACGCCTGCAAAACATTTCTGGGCGCCTATCATCCCAAAGATTGTTGCCACTGA
- Protein Sequence
- MAESSHQPSMADLKHRMLYQGQDPSQPVLRPSRQDAPIADPQYPPAYDDAIIQNATTLHQSNPQSHSADRRTFFAEPQHLSSQLLDERPERHQLAEQPTQQLPIDGQYSSLPQVRSFVALAPQPQFGLQACPIVCPACGKQGRTRLQRTANMRAHCWALWLCLFGWCCCACWYPYLMDSCRITRHYCNACKTFLGAYHPKDCCH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00616581; iTF_00517382; iTF_00486247; iTF_00502192; iTF_00583349; iTF_00599255; iTF_00553436; iTF_00570781; iTF_00576737; iTF_00565047; iTF_00577441; iTF_00513853; iTF_00557571; iTF_00499972; iTF_00498539; iTF_00542827; iTF_00518831; iTF_00596328; iTF_00497053; iTF_00607489; iTF_00521830; iTF_00560712; iTF_00567209; iTF_00610315; iTF_00574479; iTF_00593522; iTF_00497816; iTF_00482656; iTF_00597824; iTF_00528466;
- 90% Identity
- iTF_00616581; iTF_00517382; iTF_00486247; iTF_00502192; iTF_00583349; iTF_00599255; iTF_00553436; iTF_00570781; iTF_00565047;
- 80% Identity
- -