Dgau009347.1
Basic Information
- Insect
- Drosophila gaucha
- Gene Symbol
- -
- Assembly
- GCA_035045545.1
- Location
- JAWNOY010000257.1:976263-976684[+]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.3e-11 1e-07 32.1 8.8 3 69 45 115 43 116 0.84
Sequence Information
- Coding Sequence
- ATGTCAAGCGCTTCGCACGCACAGGAGCTGCAGCTAGATAATGTGTCCGCTGCCACAGCAAcgctggaactggagctggaagAGGAGCAGCCAATGAAGCCGCAGCTGCGCTTCTACAGCGTTGGCCCTAGCACCTATCGCGTGCTCTGCCCGCTCTGTCAGCATCGATCGCGCTCCGAGACGGTGCAAATGGCTGGAGCTCTGGGTCAGCTGAGCTGTCTGCTCTCCGCCTTGTCCTGCTGCTTTCCCATCTTTGCGCTAAGCTGCGTCTACACCTGTCTGCAGAGCCGGCTAAAGAGCAAGCGCGTcttctgcagcagctgcggtGGACATTTGGGCTTCCACTGGCGTcccatttaa
- Protein Sequence
- MSSASHAQELQLDNVSAATATLELELEEEQPMKPQLRFYSVGPSTYRVLCPLCQHRSRSETVQMAGALGQLSCLLSALSCCFPIFALSCVYTCLQSRLKSKRVFCSSCGGHLGFHWRPI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00587081;
- 90% Identity
- iTF_00547043; iTF_00587081; iTF_00510213; iTF_00568649; iTF_00532787; iTF_00502924; iTF_00551982; iTF_00479855; iTF_00540770; iTF_00545652; iTF_00473461; iTF_00549942; iTF_00554750; iTF_00516671; iTF_00494066; iTF_00599984; iTF_00559894; iTF_00477027;
- 80% Identity
- -