Dgau006172.1
Basic Information
- Insect
- Drosophila gaucha
- Gene Symbol
- -
- Assembly
- GCA_035045545.1
- Location
- JAWNOY010000129.1:4407415-4410563[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 8.8e-05 0.0063 17.0 5.0 1 23 167 190 167 190 0.97 2 17 0.0012 0.088 13.4 3.5 1 23 235 258 235 258 0.96 3 17 0.00086 0.062 13.9 2.8 1 23 324 347 324 347 0.94 4 17 0.0037 0.26 11.9 0.7 2 23 399 420 398 420 0.97 5 17 0.098 7 7.4 1.1 1 23 500 526 500 526 0.91 6 17 3 2.1e+02 2.8 0.7 1 19 533 551 533 554 0.72 7 17 0.015 1.1 10.0 0.6 1 23 563 585 563 585 0.95 8 17 0.00029 0.021 15.4 2.1 1 23 592 614 592 615 0.95 9 17 0.00047 0.033 14.8 1.4 2 23 623 644 622 644 0.96 10 17 0.0021 0.15 12.7 0.1 3 22 672 691 670 694 0.89 11 17 0.12 8.2 7.2 0.6 1 23 730 753 730 753 0.93 12 17 0.071 5.1 7.9 0.7 1 22 760 781 760 781 0.97 13 17 0.01 0.72 10.5 1.0 1 23 790 813 790 813 0.96 14 17 1.7e-05 0.0012 19.3 0.5 1 23 832 855 832 855 0.97 15 17 0.039 2.8 8.7 0.2 1 23 865 887 865 887 0.94 16 17 2.5e-05 0.0018 18.7 3.3 1 23 893 915 893 915 0.99 17 17 5.3e-05 0.0038 17.7 0.9 1 23 921 943 921 943 0.98
Sequence Information
- Coding Sequence
- ATGACAAGGACGTGCAGAATCTGCGGTGGCGCAGATGGACGTTATTGGATCGAGACGCCATTCAACAAATACGcagataaaacatatattcaaCTGCTGCTGGAGTTAACAAAGCTTGAGGTTGCCTTGGATCAAGCTGACAAGCTACCGCCGTGGATTTGTCGCAAATGTGCTCAGAGATTAGAGAATGCCTACGAATTTGTGCAGCAGGCTCGCAGAACTCATGACATCTGGCTACAAAAGATCTCAGAAGAATCTCCCTTAGAGGACACAGAAACAGGCACTTTAGAGTGTTTACGCGAGACTCCAATACAATTACTAGACATAGAGGACATTACAATTAAAATGGAAGAGCCCTCAGAGCCTGTCATACCATCAGCCGATTTCAACAACATAATTGATCCCTTGATTAAGAAAAACAATGTGGATGATGACAGTAGCGATGATGACGTGCCCCTCAAGCAACGCCAGACAGCACAGACCAAATTGCCCATGTTGCACAAGTGCAATAAATGCGACAAAGCCTTTAAATATGTAACCAATCTCTTCAGGCACAAGCAGCGTGATCATAGTCCATCTAAAGCGCAGGAAGCTGAGGAGAAGGCTGATCATGTAGAACCATTCCAAGAAAACCCGATAAAGAGCTCCATTGACGCAAGCAGCAGCGCGGCAGACTTGGATAATGAATCAGAGGACAACTACTACAAGTGCAATCAGTGCGATAAGTCCTACAAGTACATTATGCTGCTTAtcaagcacaagcacaaggCACACGTCTCCAGCCAGATATCAGCGCAGCCCAGGCCAATTGGAACCTGCAATTCCACCACAGAGCAAagagataaaataaaagagtCTCAGCGACAGCGCTCGAAGCCACCAAGCACAGATTCCTTGGTGCATAGCATCATCAAGGAGATAACCTTTCCCGATGAGGATGATACGGACAATTCCAGTTCAGACAAGTACTACAAATGCGATCAATGCGATAAGTCCTACAAATACATTGTGAGTCTCATCAAGCACAAGCACAACGAGCACAAGGCGTACAAGGATTCTGATGAGGACGAAGACGAAGCCACCTCATCCAGGTACGCAACGGACACGCCTGCTATGTCGAAGCCCTCGCGCATCGATCGACGCGTCAAAGGCTTCGATTTACATCGCTGCAAGCCGAACGGATCCAAGGAGATTCAATGCATGATCTGTCTGCGAAGATTTATAAAACTTCGTGAGCTGCGCGACCATTTAAAATCTCATCCCAAAGACTTTCAATTCGAGGTTCATGGCGAGCCTATTGAACGAATAGCAGAAGGCTTCTATAAGACCGCCGTAGAGTCCACAGCTGCCGGCTTAAAGCGGCGCATTTTCAATGATCTCAAGGTGGGCATGTACGGGCGCTACTACTCCATAACGAATGAGGCGCGCTACGAAATGAATCTGGATAGCTCCGATACGGACAGCGACGGCGAGGCGGATGTTGTGGAGCGCCATAGCTATGCCTGTGAGCTGTGCGATTCGCCCGAGGGCGTATTTCCACGCAAATATCAATTGCACGAACATCATCGAAAGGACCACACCTGGCTAGAGGCGCCGCATGTTTGCCAGCGTTGCGATGCACGTTTCCTGAGTGCCCAGTTGCTGGATCATCACACGCTCAAGCTGTGCCAGAATACGCTAAAGCGATTCATGTGCGATAAGTGTCCGCAGCGTTTCTTCTGGCGGCGCAATCTGCGCGCGCATCTCGCGGATCACAAAAACAAGCAAGAGACTTATCCCTGTGATCAGTGCTCGCGCAGCTTTCAGGATAAGAGCGCCGTAACCAAGCACAAGCTAATGCACCACGACGGCAGCAATGAGCTTCTACCCTGCCGTTGGTGTACCCGCACCTTCTATCGGCCCGCTCTGTTGCACAAGCATGTACAGCGGCACGGCTTCAGCGGAGAGGATCTTCCTTTGGCGGAGACACTGCTAGCGGATGCTGCCAAAACCTCCGGACCCAAGTCCATAATTTGCAAGCTCTGCGACATGCAATTCGTTAGCATTGGCGATCTGCGACGGCACATCTCGATGCAGGCGCACAGTGAGGAGACGTCCAACTATATGATAAGCACCGAGGAAGGCTTTGAGTTGCTGTTAGACGAAACGGATGACAGCGACGATGAGGCCACTGGGTCTGGCAAAACCTATCTATGTGCTCTGTGCGACATGAACTTTCAGCGACGGCGAGATATGAGTGAACACCAGTATTCCCTGCACACTTTTGACAAGTTGCCCTACTCCTGCGAGCATTGCATTTACAAGACCGTCGACAAGACCATGCTGGAGCAACATTTGCGAACGCAGTGCCTCAACCAGgagaagaaatttaaatgctcGCGCTGTGGCTACAAATTCATGTGGCGCGAAAACCTGGAGTTGCACTTGTCCAGCCAACATTCCAAGTCATCCAATCCGGCACCTGTTACAATCAAGCGAAGCAGACGTTTTAGATATCAATGTCCACACTGCTGGCGCTCCTTTGTGGTGCAGCCCAGCCTGGACAAGCATATACGAGACATGCATGTCGCCAAAAAGAATCCGGGCAAGAAATATCTCTGTTCACTATGCGGCCTGGAGTCCCTGACGCCCAACAAGCTCAACATACACATGCGCCGACACAACGGCGAGAAGCCATTCAAATGCGATCTCTGCGACATGTCCTTTACCGTGCACTACGAATTGAAGGTCCATCGACGCAAACACACAGGCGAGCGACCCTATCAATGCACGTTCTGTGCCAAGGACTTTGCCAGGCCGGATAAGCTAAGGCGGCATGTCTACATGCATAGCGTTAAGCGATAA
- Protein Sequence
- MTRTCRICGGADGRYWIETPFNKYADKTYIQLLLELTKLEVALDQADKLPPWICRKCAQRLENAYEFVQQARRTHDIWLQKISEESPLEDTETGTLECLRETPIQLLDIEDITIKMEEPSEPVIPSADFNNIIDPLIKKNNVDDDSSDDDVPLKQRQTAQTKLPMLHKCNKCDKAFKYVTNLFRHKQRDHSPSKAQEAEEKADHVEPFQENPIKSSIDASSSAADLDNESEDNYYKCNQCDKSYKYIMLLIKHKHKAHVSSQISAQPRPIGTCNSTTEQRDKIKESQRQRSKPPSTDSLVHSIIKEITFPDEDDTDNSSSDKYYKCDQCDKSYKYIVSLIKHKHNEHKAYKDSDEDEDEATSSRYATDTPAMSKPSRIDRRVKGFDLHRCKPNGSKEIQCMICLRRFIKLRELRDHLKSHPKDFQFEVHGEPIERIAEGFYKTAVESTAAGLKRRIFNDLKVGMYGRYYSITNEARYEMNLDSSDTDSDGEADVVERHSYACELCDSPEGVFPRKYQLHEHHRKDHTWLEAPHVCQRCDARFLSAQLLDHHTLKLCQNTLKRFMCDKCPQRFFWRRNLRAHLADHKNKQETYPCDQCSRSFQDKSAVTKHKLMHHDGSNELLPCRWCTRTFYRPALLHKHVQRHGFSGEDLPLAETLLADAAKTSGPKSIICKLCDMQFVSIGDLRRHISMQAHSEETSNYMISTEEGFELLLDETDDSDDEATGSGKTYLCALCDMNFQRRRDMSEHQYSLHTFDKLPYSCEHCIYKTVDKTMLEQHLRTQCLNQEKKFKCSRCGYKFMWRENLELHLSSQHSKSSNPAPVTIKRSRRFRYQCPHCWRSFVVQPSLDKHIRDMHVAKKNPGKKYLCSLCGLESLTPNKLNIHMRRHNGEKPFKCDLCDMSFTVHYELKVHRRKHTGERPYQCTFCAKDFARPDKLRRHVYMHSVKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00567692;
- 90% Identity
- -
- 80% Identity
- -