Basic Information

Insect: Drosophila gaucha
Gene Symbol: -
Assembly: GCA_035045545.1
Location: JAWNOY010000292.1:7937690-7942185[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 8.2e-05 0.0058 17.1 1.6 1 23 345 367 345 367 0.93

2 9 2e-08 1.4e-06 28.5 2.6 1 23 373 395 373 395 0.98

3 9 8.4e-06 0.0006 20.2 0.8 1 23 401 423 401 423 0.98

4 9 6e-06 0.00043 20.7 1.0 1 23 429 451 429 451 0.97

5 9 3e-05 0.0021 18.5 1.4 2 23 542 563 541 563 0.96

6 9 3.1e-09 2.2e-07 31.0 1.6 1 23 569 591 569 591 0.98

7 9 0.0038 0.27 11.9 0.9 3 23 599 619 597 619 0.97

8 9 6.7e-05 0.0048 17.4 1.5 1 23 625 647 625 647 0.99

9 9 0.017 1.2 9.8 1.1 1 23 654 678 654 678 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	8.2e-05	0.0058	17.1	1.6	1	23	345	367	345	367	0.93
2	9	2e-08	1.4e-06	28.5	2.6	1	23	373	395	373	395	0.98
3	9	8.4e-06	0.0006	20.2	0.8	1	23	401	423	401	423	0.98
4	9	6e-06	0.00043	20.7	1.0	1	23	429	451	429	451	0.97
5	9	3e-05	0.0021	18.5	1.4	2	23	542	563	541	563	0.96
6	9	3.1e-09	2.2e-07	31.0	1.6	1	23	569	591	569	591	0.98
7	9	0.0038	0.27	11.9	0.9	3	23	599	619	597	619	0.97
8	9	6.7e-05	0.0048	17.4	1.5	1	23	625	647	625	647	0.99
9	9	0.017	1.2	9.8	1.1	1	23	654	678	654	678	0.95

Sequence Information

Coding Sequence: ATGGCCATCAACTTCTCGGCCTCCTTTGCGGCCTGCATAGCAGCAGGCTTGAAGGTTCCCCGCCAGATAATGTACTGCATTACGCAGGACACGGGCCAGCCGTATGTGCTCTACAAGGACTCGCAGGACGCGGAGCGCAATGCAGGCGCCATAGGCGCCAGCGCCGCCCAATGGGGCAGCGACATGTACCCCAACATACAGCAGCAAGCGCAGCAGCATCTAAacgcccagcagcaacagcagcagcagcagcaacaacagcagcagcaacagcaacagcaacagcagaacgCAACAGTCGCTGcgcaggcagcggcagcagctgcagcagccgctgccgctggtCAGCCCCAGAGTCCGCCGGGCGGCCAAGAACCCCGGGACAATGGCAGCGGCGATGGTCGACAGCAGCAGGTGTCGCCCTCTTCCAGTCCGTATCCTTcggtgcagcagcaacagcagcaacgagcGAATGGCAACGCCGACGACGATGCCATGAATCAGCTTGCCAATCAACAGAACTCCGCGCCAAATCCAAACCAAAGCAGCAACGAGCCGCAGCACGCTCCCGCGAATGGTGGCGAGCCTGGACAGGGTAATCCGCATGTGCAGCAGAATGGCGGTGGGCAGCCACAGGGTGATCCGAGCAATGGCTTCCAGACGCCCGACTACTATGCGCCGCGCCATGGAGCGCCGCAGGGCGGCATGCTGGCGCCACCTGGCTTCCCGCCGCTGCACTATCTGAACAAGGGCGTGCTGCCCATGGAGCAGAATGGCGGCGAGTCGTACGCGCTGCCCGAGCTGCTGCccggccagcagcaacagcagcagcaacaacagcagcagcagcagaatggAGCACAGCCCAACGGCGGCAATCAGAACGGTGGCCCGGCTAATGGCAATGCCAATGAGGGCGCAGCGGCGCCCAATGGCGGACCAGCGGGCGCTGCGGGCGCCACGGGGACGACGAGCGGTCGCACGGGACCGGGCCGCCCGCACAAGAACAAGCCGCACAGCGACCTGCGGCTGTTCAAGTGCCTCACCTGCGGCAAGGACTTCAAGCAGAAGAGCACACTGCTGCAGCACGATCGGATACACACGGATGCCCGTCCATTTCCGTGCTCCGAGTGCGGCAAGCGCTTTCGGCAGCAGTCTCATCTCACACAGCATCTGCGCATCCATGCCAACGAAAAGCCATTCACCTGCCCGTACTGCTCGCGCAGCTTCCGGCAGCGAGCCATACTCAATCAGCACATACGCATCCATTCGGGTGAGAAGCCCTTCGCCTGCCCCGAGTGCGGCAAGCACTTTCGCCAGAAGGCCATCCTCAATCAGCATGTGCGCACCCACCAAGATGTCTCGCCGCATCTCATCTTCAAGAACGGACCCCATCCGACGCTCTGGCCCTCGGACGTGCCCTTTCCCGGGGATGAGGCGGACTCGAAGGGCGACATTGCCGTCGCTGGCGGCGGCTATCATGACGACGACTCCCAAGGCACACCCGACGGCAGCGGTGGCATGCACTATCCGTCCTACTTCAAGGATGTCAAGGGCCAAAAGATACTGCCCGAGGTGCTGCAACATATTGGCGTGCGGCCGGCGAATATGCCGCTCTACGTGCGCTGCCCCATCTGCGACAAGGAGTTCAAGCAGAAGACCACGCTGCTGCAGCACGGCTGCATACACATCGAATCCCGGCCGTATCCCTGTCCGGAGTGTGGCAAACGTTTCCGCCAGCAATCGCATCTCACGCAGCATCTGCGGATTCATACGAACGAGAAGCCCTTCGGCTGCATGTACTGTCCACGCTTCTTCCGCCAGCGAACCATTCTGAATCAGCACTTGCGCATTCACACTGGCGAGAAGCCCTACAAGTGCACGCAGTGCGGCAAGGACTTCAGACAGAAGGCCATTCTGGATCAGCACACGCGCACCCACCAGGTAGGCGATCGTCCGTTCTGCTGCCCCATGCCCAATTGCCGGCGTCGCTTTGCCACGGAGAACGAGGTGACGAAGCACATTGACAACCACATGAATCCCAACAGCACCAAAGTGcgtcgccagcagcagcagcaacagcagcagcaacaacaggtgCAGCaggtgcaacagcagcagcagcagcaacagcagcaagtgcagcagcaacagcagcagcagaatgcAGCCGCCTCGGCTGCTGTCGTCAATCACTTGATGAACGATGCCAAGAGCTTGGCTGCGCAGCAAttcctcaacaacaacaatcccGCCGCTGTCGACAACAAGGCCAACATATTGCCGGTGCGCAGCATGGCAGTGaatgctgctgcggctgcagcagtCGCCCAGCAGTCGGTGGTCAAGAATGAGCTATACTTTCCGCAGTGCTACGGCCCGCCCTTCCAGCATCCCTTCcacgcccagcagcagcagcaacagcagcagccgagcGCAGCGCATGCCAATGGACCCACGCCTCCTGTAACGGTCACCGTCTCGAATGCGGTGGCTCCTGGTGTTGTGGTTCAGCAGAATGCGGCTACCTCTGTGGTGGCCCAGTGA
Protein Sequence: MAINFSASFAACIAAGLKVPRQIMYCITQDTGQPYVLYKDSQDAERNAGAIGASAAQWGSDMYPNIQQQAQQHLNAQQQQQQQQQQQQQQQQQQQQNATVAAQAAAAAAAAAAAGQPQSPPGGQEPRDNGSGDGRQQQVSPSSSPYPSVQQQQQQRANGNADDDAMNQLANQQNSAPNPNQSSNEPQHAPANGGEPGQGNPHVQQNGGGQPQGDPSNGFQTPDYYAPRHGAPQGGMLAPPGFPPLHYLNKGVLPMEQNGGESYALPELLPGQQQQQQQQQQQQQNGAQPNGGNQNGGPANGNANEGAAAPNGGPAGAAGATGTTSGRTGPGRPHKNKPHSDLRLFKCLTCGKDFKQKSTLLQHDRIHTDARPFPCSECGKRFRQQSHLTQHLRIHANEKPFTCPYCSRSFRQRAILNQHIRIHSGEKPFACPECGKHFRQKAILNQHVRTHQDVSPHLIFKNGPHPTLWPSDVPFPGDEADSKGDIAVAGGGYHDDDSQGTPDGSGGMHYPSYFKDVKGQKILPEVLQHIGVRPANMPLYVRCPICDKEFKQKTTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPFGCMYCPRFFRQRTILNQHLRIHTGEKPYKCTQCGKDFRQKAILDQHTRTHQVGDRPFCCPMPNCRRRFATENEVTKHIDNHMNPNSTKVRRQQQQQQQQQQQVQQVQQQQQQQQQQVQQQQQQQNAAASAAVVNHLMNDAKSLAAQQFLNNNNPAAVDNKANILPVRSMAVNAAAAAAVAQQSVVKNELYFPQCYGPPFQHPFHAQQQQQQQQPSAAHANGPTPPVTVTVSNAVAPGVVVQQNAATSVVAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00509959;
90% Identity: iTF_00493805;
80% Identity: -