Dgau002839.1
Basic Information
- Insect
- Drosophila gaucha
- Gene Symbol
- lrrfip2
- Assembly
- GCA_035045545.1
- Location
- JAWNOY010000073.1:5323-23440[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.2e-92 1.6e-87 293.7 21.8 63 299 2 226 1 227 0.99 2 2 0.12 2.4e+03 -2.4 0.5 127 281 246 268 228 282 0.46
Sequence Information
- Coding Sequence
- ATGACACGTGCAACAGCTTCGCGACGCAGTAGTGAGGATTCGTTGGAGGATGAAAGTCGTAGCTTACGTGATATTAAACACGAACTTAAAGAAGTCGAAGAACGTTTTCGAAAAGCGATGATAACCAATGCCCAACTAGACAACGATCGATCGGCTCAAACCTATGAAGTTAAGCTACTCAAAGATAAAAGTGAGACAATGCAGGAATCTCTTGCCCAGCTGCAGCgcgaatttaaaaataaacttcgCGATTGCAGTGCGCTTAAACGCAACTTGGACCGCACAACACTTGATTTAAACCTAGTGCAAGGTCAGTTAAGCGAGCGTGATACGCTAATAGAAGAACACGgtcttattattgttgctattgaaAATAGTGATGGCAGTGATGCCAAGCGGGCTCTAGTCAGTGTTGAAAACGCCAATATTTTGGCGACTGTGCAGGGTTCTCTTGatgtaagactaaataaattttcagagGAAAAACAGCGCCTTCTGCTCGAAATGCAAAAGCTGAATGAACAATTAGATACGTTTAAAAGTGAAGGCAGAGCTGGCCGAGGCAGTTCATTAAGTGACTCTTTAGGGTACGATGATGACTATGATGTTCAAAGAGAGTCAAATAAAATCATCTccgattataaatataaactgcAAAAAGCTGAACAGGAAATCGCCAGTCTTCAAGCAAACTTGGCCCGTTCAGAGAGCCAAGTTATACGTTATAAAAGCACGGCTGAAGCTGCCGAAAAATCTGAGGCTGAACTGAAAGTCGAACGACGTAAGCTGCAACGCGAGACGGCGCGTCAAGGTCTCTATGTAAAGTTGAGTTGCGCACGTAAGGAGGCGCACCAACCAACCTGTCTCGGCACCGCTGATTGGCACTGGCAAATTGTACTATCATCGTTTTCACAGTGTGATTTGACAGCTCAGAAGGATTCTCTTGCGGCGCAAACGTTGCTTGTCATCAAATTCGGCGTAGACGGTGGCCCATGGTTCCTCAGGGGCTTGTGCCATTATATTGCCGGACACCTGAAGTTGGCGTGGCTTATAGCGATGGCACAGCTCGCAACGCTGCACTAG
- Protein Sequence
- MTRATASRRSSEDSLEDESRSLRDIKHELKEVEERFRKAMITNAQLDNDRSAQTYEVKLLKDKSETMQESLAQLQREFKNKLRDCSALKRNLDRTTLDLNLVQGQLSERDTLIEEHGLIIVAIENSDGSDAKRALVSVENANILATVQGSLDVRLNKFSEEKQRLLLEMQKLNEQLDTFKSEGRAGRGSSLSDSLGYDDDYDVQRESNKIISDYKYKLQKAEQEIASLQANLARSESQVIRYKSTAEAAEKSEAELKVERRKLQRETARQGLYVKLSCARKEAHQPTCLGTADWHWQIVLSSFSQCDLTAQKDSLAAQTLLVIKFGVDGGPWFLRGLCHYIAGHLKLAWLIAMAQLATLH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -