Dgau010490.1
Basic Information
- Insect
- Drosophila gaucha
- Gene Symbol
- -
- Assembly
- GCA_035045545.1
- Location
- JAWNOY010000292.1:3261836-3263428[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.8e-16 6.7e-13 48.2 0.0 2 45 362 405 361 405 0.95 2 3 0.023 41 4.1 0.0 27 37 434 444 430 449 0.89 3 3 3.1e-18 5.5e-15 54.9 0.0 2 42 471 511 470 513 0.96
Sequence Information
- Coding Sequence
- ATGGGCCACTCGTCCACAATAATGGATATTCAGCGCGTTCTGCTACATCAACAAAGCAACAATCAGCAATGCGAAGTATTGCTTGTGGCCAAAGATGGCATCAGCGTTCGCGCCCACCTCTTCGTCCTAAGCACCTGTAGCGATCTGATGCGCAATCTGCTTGTCGATTTGCCTGCCGGCCAGGAGGCCACTGTCATTCTGCCAGACATCCGTGGTGAGCTGCTCGAGAGCATGTTGTCGTTTATTTATATGGGGGAAACCAGTTTACCTTCTGCCCTGCTCACCGAGTTTCTCGAGGCCATCAATCTACTGGGCATCAAGTCGGCCATAAGCTTTGAAACCAATCCCACAGCCATGACCACCTCAAATGTTATAAGCGGCGCTATGGCTGTAGAAGCAGCCAAGTCAATTAGCGGGCTACATATTGCGAATACAGCTCTtatggaggaggaggaggaggaagaagaTGCTGGCGCTGTGGTCGCTAAATTGGAGGGGGAAAATGCTATACTTACAAatcctcagcagcagcacgagcaGGAAGGCCGAACCTTAGAATTCCTTGATGTGTACGGCGAACAGCCAAAAATAACATATTCTATCGAGCACATGGGCGGCACAACGAGCggaaatcaatatatattaacagaGAATACGGGAACATTTACTATAACACAATCAGCCTCATCTGTGGCCAAGTTGGGAGTGCAAGGAAGTTCAGCTGTGGTCGAGTCTGTGGAGACAGGTGAGCTAGGCGACGAGGATGTCGAGGCAGAGGCTACAGACGAGCACGAAGAATCCGAGTCACAATTAATCGAGGAGGAATATGTAGGATCGGGTAATCCTTTAATAGAGATGAGCGCAGAGGCGGATGTTGACATGCACGAGGATGGAATGCATGATGGAGACGAAGACGATGATGACGAACTGCTGGATGTAAAACCTCGCAAATCTCACCTAGACATGAAAATGTTAAAGGCCAAAGCACGCCAGCGTCCAACATCAGCGAAGGCAATGAAGAAGGCAATGACGaaacagcatcaacaacacGCAGCGCTTAAAAAGGAATGTAGGGATGATATTAATGATGCCCTCGACCTGGCAGCGACTGCCGTCCTTCATGAAGGTCTTAGTCTGCAAAAGGCTGCCGATCGCTACGACATATCGAAAACAGTGCTATGGCGACGTGTGCGCTCCAATCCAGCCTACATGAGAATAAAGCGAGAGAAGCCTTCGCTTTCGGAAGCATATGAGCGCCTAAAGAATGGCGATTCGTTGAAAAGCATAAGCCAGGATCTGAATATACCCATGTCGACGCTGCACCGGCACAAGGTGCGGCTTGCGGCACAGGGTCGCCTGCCCGACTTCGTTGCCTGCCGACGACGTGACAGCACCCCAAAGGACGAGCTGCGTGAAAAGCTAGCCAAGGCAGTGCATGCCTGCATCAACGATGGCATGACCCAAAATCATGCAGCGAATCTATTCGAAATACCTAAGAGCACGCTCTGGCGGCACTTGCAACGGCGCGTTACCGAGGCGGAACGTAAAGTCAAGGAAGAACAGGAAGAAGAGGATGATGATGCtatgaattaa
- Protein Sequence
- MGHSSTIMDIQRVLLHQQSNNQQCEVLLVAKDGISVRAHLFVLSTCSDLMRNLLVDLPAGQEATVILPDIRGELLESMLSFIYMGETSLPSALLTEFLEAINLLGIKSAISFETNPTAMTTSNVISGAMAVEAAKSISGLHIANTALMEEEEEEEDAGAVVAKLEGENAILTNPQQQHEQEGRTLEFLDVYGEQPKITYSIEHMGGTTSGNQYILTENTGTFTITQSASSVAKLGVQGSSAVVESVETGELGDEDVEAEATDEHEESESQLIEEEYVGSGNPLIEMSAEADVDMHEDGMHDGDEDDDDELLDVKPRKSHLDMKMLKAKARQRPTSAKAMKKAMTKQHQQHAALKKECRDDINDALDLAATAVLHEGLSLQKAADRYDISKTVLWRRVRSNPAYMRIKREKPSLSEAYERLKNGDSLKSISQDLNIPMSTLHRHKVRLAAQGRLPDFVACRRRDSTPKDELREKLAKAVHACINDGMTQNHAANLFEIPKSTLWRHLQRRVTEAERKVKEEQEEEDDDAMN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00549654;
- 90% Identity
- iTF_00512829;
- 80% Identity
- iTF_00512829;